Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0956 ATGAATGTGACAAATAAGCCAAACCCAGATGGTTCCACCAATGGGTTTCAGTCTCAGCTTCAAGTTCAACAACAAAATGGGTGGGAGCAGGGATCATCTAGACTCAGACCCACTAAACCTTACCCTGCACCAACGGCTCGGTACCAGGACATTGTTCGTGATGCAAACCTCTTCTGGGGAACGCTTCAAGCTTTTCACAAAATACTTGGCACCAAATACAAGGTTGCTACTGTGGGAGGAACGTCACTTGATCTACATCGCCTTTTTGTCGAAGTTACATCTCGTGGTGGGATTGAAAAGGTGATTGTTGATCGTAAGTGGAAGGAAGTGATTCTGACCTTCAATTTCAAAGATACCATAACGAGTGCATCATTTGTGGTGCGCAAATCCTATCTATCGATGCTTTATCACTATGAGCAAGTGTATTATTTTGGGAGGCAAGGCATTCCTCCCCCAACACCTGATCTTATGATTAGAGGCCAATCAGGCCAACCCTATAGCTCGACAACCATTCCAGAAGTTGCTGCTGTGAATGATTCACCTGTTCAGAGTACTCCAGTACAGGCACATGATGATATGGTTTCTGGAACAATTGATGCGAAATTTGATGGTGGATATGTAGTTACAGTGATTCTAGGTTCTGAGCAGCTGAAAGGTGTCCTGTTTCATGTTCCTGATAATGTGTCCCAGAGTTCTCATGCCGAAGGCACATCTAGTTCACAGAATCTTGGTGATGGCACATCTAATTCACAGAGTCGAAAGAGAGCAAAATATGCTCCACGTGATCCATTTCGGCCAAAGTCGAACAGGAGCGGTTACAACTTTTTCTTTGCTGAGAATTATGCCAGGCTGAAGCCCTCATATCATGGGCAGGAGAGAGCAATTAGTAAGAGGATTGGGTTTCTATGGAACAATCTGTCAGAAGCTGAAAGACAGGTTTATCAAGAGAAAGGGATGAGAGATAAGGAAAGATACAGGACTGAACTGATGGAGTACAAATCCAATAATTCAACTCCAAATGCTCAATAG 1029 0.4373 MNVTNKPNPDGSTNGFQSQLQVQQQNGWEQGSSRLRPTKPYPAPTARYQDIVRDANLFWGTLQAFHKILGTKYKVATVGGTSLDLHRLFVEVTSRGGIEKVIVDRKWKEVILTFNFKDTITSASFVVRKSYLSMLYHYEQVYYFGRQGIPPPTPDLMIRGQSGQPYSSTTIPEVAAVNDSPVQSTPVQAHDDMVSGTIDAKFDGGYVVTVILGSEQLKGVLFHVPDNVSQSSHAEGTSSSQNLGDGTSNSQSRKRAKYAPRDPFRPKSNRSGYNFFFAENYARLKPSYHGQERAISKRIGFLWNNLSEAERQVYQEKGMRDKERYRTELMEYKSNNSTPNAQ* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0956 342 ProSiteProfiles ARID domain profile. 52 143 IPR001606 GO:0003677
Gso4g0956 342 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 30 341 - -
Gso4g0956 342 MobiDBLite consensus disorder prediction 1 42 - -
Gso4g0956 342 Pfam ARID/BRIGHT DNA binding domain 57 139 IPR001606 GO:0003677
Gso4g0956 342 SUPERFAMILY ARID-like 51 152 IPR036431 GO:0003677
Gso4g0956 342 MobiDBLite consensus disorder prediction 229 269 - -
Gso4g0956 342 MobiDBLite consensus disorder prediction 1 33 - -
Gso4g0956 342 MobiDBLite consensus disorder prediction 229 254 - -
Gso4g0956 342 CDD HMGB-UBF_HMG-box 266 329 - -
Gso4g0956 342 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 266 333 IPR009071 -
Gso4g0956 342 SMART hmgende2 265 334 IPR009071 -
Gso4g0956 342 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 30 341 - -
Gso4g0956 342 Pfam HMG (high mobility group) box 266 333 IPR009071 -
Gso4g0956 342 SMART bright_3 53 144 IPR001606 GO:0003677
Gso4g0956 342 SMART ARID_2 49 139 - -
Gso4g0956 342 Gene3D High mobility group box domain 248 341 IPR036910 -
Gso4g0956 342 Gene3D - 42 148 IPR036431 GO:0003677
Gso4g0956 342 CDD ARID_HMGB9-like 54 139 IPR045303 GO:0003677
Gso4g0956 342 SUPERFAMILY HMG-box 265 336 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0956 Gso-Chr4 11796833 11801784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0956 18 338 ARID Transcription Factor Family AT3G13350 48.160 1.17e-96 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gso4g0956 ARID 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0956 - - gmx:100793029 696.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0956 4 11796833 11801784 Gso6g2651 6 48312723 48317542 GST