Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0952 ATGTCGATGCTGCTCAGGAAGGTGTGGGAAAGGGTGTTATGGAGATCTGATTCTTCAACGTCAGCATCAGCATCAGCATCATCTTCATCATCATCATCACCACCAGAAGTGGCATGTTCTGACATGGGCGAGTTGGAGCTGCTACCCAGTGACATCTTGATGCACATTCTGAGACTTTTGGGTCCAAAAGAGGCTGCAAAGTTGAGTGTGGTTTGCAAGGCTTTGAGATCCCTTGTGTCTGATAACAGACTTTGGATTCACTTTCTTCAGACCCATCAGGCTGAGCCCTCTGGGGATTCTGTCTTCTTTGCTGAGACCACCTTGAGCTATGGCTACCCTCTTCCGCCCTTTGCTGGCCATTGGCCCCAACTATCATTCAAGCATATTTATGGCCAGAGAGCACTGGTTCCTGGTTCTATTATCATCGATGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAATACGCATATCCATCAGGGCGTTCAGCAACATTTTTGGAATTTGGTAATATTGAGTCACCAATGTATACTAGGCTTCGACATTTTTTTGCAACTATTTATAACAGGATGCAGGTGAAACCGAATAAACAACCAGTTATTGTTTCTGTGCCAATATGCCATTATGATGATACCGAATCAGCCAAAGCATCTAGGCAACAGCTTAAAGAGGCAATTTACGCTTCCTTGTTTGACATGAATGTTCCTGCTGTTTGCGCCATCAACCAGGCCACTCTAGCTCTGTATGCTGCAAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACGTCTATAGTTCCAATTTTAAACGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTTGTGGGGCTGGGAGCACTGAAACTTACAGGATTTCTTAGGGAGAAGATGCAACTGAATAATTTAAGTTTTCAATCTTTGTACACTGTTCGCACATTGAAAGAGAATCTATGCTATGTTGCACTTGATTATGAAGCTGAGCTATTGAAAGATACAAAAGCATCATTTGAAGCTGCTGGAGAAGGATGGTTTACCCTTTCAAAAGGGAGGTTTCAGACAGCAGAGATCCTATTCCAGCCACATCTTGCCGGAGTGCAAGCTATGGGTCTGCACCAAGCCATAGCTCTTTGTGTGGAACATTGCCATTCTGCAGATTTAGCATGTGACAGTGATTGGTACAAGACTATAGTCTTATCAGGGGGGACTGCATGCTTACCTGGTTTGGCTGAAAGGATAGAGAAGGAACTCCATGCCTTACTTCCTCCCTACGTGTCCAATGGAATTAGAGTCATACCTCCTCCATATGGTGCTGATACTCCATGGTTTGGAGCAAAGATTGTTGGCAATTTGAGCACCTTTCCTGGTCATTGGTGCGTCACAAAAAAGCAGTTCCGTCAGAAGCCTAGACTCAACCTCATATGGTGA 1434 0.4428 MSMLLRKVWERVLWRSDSSTSASASASSSSSSSPPEVACSDMGELELLPSDILMHILRLLGPKEAAKLSVVCKALRSLVSDNRLWIHFLQTHQAEPSGDSVFFAETTLSYGYPLPPFAGHWPQLSFKHIYGQRALVPGSIIIDGGSGYCKFGWSKYAYPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPNKQPVIVSVPICHYDDTESAKASRQQLKEAIYASLFDMNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQLNNLSFQSLYTVRTLKENLCYVALDYEAELLKDTKASFEAAGEGWFTLSKGRFQTAEILFQPHLAGVQAMGLHQAIALCVEHCHSADLACDSDWYKTIVLSGGTACLPGLAERIEKELHALLPPYVSNGIRVIPPPYGADTPWFGAKIVGNLSTFPGHWCVTKKQFRQKPRLNLIW* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0952 477 PANTHER ACTIN 90 474 IPR004000 -
Gso4g0952 477 SMART fbox_2 48 88 IPR001810 GO:0005515
Gso4g0952 477 Gene3D Actin; Chain A, domain 4 287 370 - -
Gso4g0952 477 SUPERFAMILY Actin-like ATPase domain 253 468 IPR043129 -
Gso4g0952 477 CDD NBD_sugar-kinase_HSP70_actin 140 284 - -
Gso4g0952 477 Gene3D - 38 132 - -
Gso4g0952 477 Pfam F-box domain 47 86 IPR001810 GO:0005515
Gso4g0952 477 SMART actin_3 137 467 IPR004000 -
Gso4g0952 477 ProSiteProfiles F-box domain profile. 42 88 IPR001810 GO:0005515
Gso4g0952 477 SUPERFAMILY F-box domain 37 96 IPR036047 GO:0005515
Gso4g0952 477 Gene3D - 244 442 - -
Gso4g0952 477 Pfam Actin 186 467 IPR004000 -
Gso4g0952 477 Gene3D - 180 469 - -
Gso4g0952 477 PANTHER MACRONUCLEAR ACTIN 90 474 - -
Gso4g0952 477 SUPERFAMILY Actin-like ATPase domain 139 259 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0952 Gso-Chr4 11716063 11725808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0952 186 469 Cytoskeleton Gene Families AT3G12110 34.130 7.02e-43 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0952 K16616 - gmx:100791973 944.11