Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0897 ATGGCAGCTATGATGGATTTTTACAGCAGCAGCACAGAGTTTCAACTTCACTCAGATCCATTCAGGGGTGAACTAATGGAAGTTCTTGAACCTTTTATGAAAAGTCCTTTCTCAACCCCTTCTCCTTCAAATTCTTGTTTTCTTTCTACCTCTTACTCTCCTTCCCCCAACAACTACTCTCCCTCCCTATACTCAAACGGGTTATCATCCATACCCAACACCACCCAAAACTTAATTGGTTTCGGGCAAGGGCAGCCCACATCTCTTGTGGGCCTGAACCACCTAACCCCATCTCAGATCTCTCAGATCCAGGCCCAAATCCAGATCCAGAATCACAGCAACACGCTGAGCTTCCTGGGGCCGAAGCCCATCCCTATGAAGCACGTGGGCATGCCTCCGAAGCCCACGAAGCTATACAGAGGGGTTCGACAGAGACACTGGGGGAAGTGGGTGGCTGAGATTAGACTCCCGAAGAACCGGACCAGGCTATGGCTGGGAACCTTCGACACCGCCGAGGAAGCCGCTCTGGCGTACGACAAGGCCGCGTACAAGCTCCGAGGTGACTTCGCCAGGCTCAACTTCCCCAACCTCCGACACCAGGGTTCCTCCGTCGGTGGTGACTTCGGGGAGTATAAGCCTCTTCATTCCGCCGTTGACGCCAAGCTTCAGGCCATTTGCGAGGGCCTGGCTGAGCTGCAGAAACAGGGGAAGACCGAGAAGCCTCCGAGGAAAACGCGATCCAAACTCGCTTCTCCGCCAGAGAACGACAACAACAACAACAACAACTCTTGTAAGGTCGAAGCTGCTTCCTCCTCTTCTGAAGGTTCTTCGCCGCTTTCGGTTCTGACTTTCGCTGACGTCAGCGAGCCGCAGTGGGAAGGTGATTCGGATAGTTTTAATCTCCAGAAGTACCCCTCTTATGAGATCGACTGGGATTCTCTCTGA 945 0.5302 MAAMMDFYSSSTEFQLHSDPFRGELMEVLEPFMKSPFSTPSPSNSCFLSTSYSPSPNNYSPSLYSNGLSSIPNTTQNLIGFGQGQPTSLVGLNHLTPSQISQIQAQIQIQNHSNTLSFLGPKPIPMKHVGMPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGDFGEYKPLHSAVDAKLQAICEGLAELQKQGKTEKPPRKTRSKLASPPENDNNNNNNSCKVEAASSSSEGSSPLSVLTFADVSEPQWEGDSDSFNLQKYPSYEIDWDSL* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0897 314 ProSiteProfiles AP2/ERF domain profile. 138 195 IPR001471 GO:0003700|GO:0006355
Gso4g0897 314 SUPERFAMILY DNA-binding domain 138 196 IPR016177 GO:0003677
Gso4g0897 314 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 4 313 - -
Gso4g0897 314 SMART rav1_2 138 201 IPR001471 GO:0003700|GO:0006355
Gso4g0897 314 MobiDBLite consensus disorder prediction 233 250 - -
Gso4g0897 314 MobiDBLite consensus disorder prediction 251 279 - -
Gso4g0897 314 Gene3D AP2/ERF domain 138 196 IPR036955 GO:0003700|GO:0006355
Gso4g0897 314 Pfam AP2 domain 139 187 IPR001471 GO:0003700|GO:0006355
Gso4g0897 314 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 313 - -
Gso4g0897 314 CDD AP2 137 197 IPR001471 GO:0003700|GO:0006355
Gso4g0897 314 PRINTS Ethylene responsive element binding protein signature 139 150 IPR001471 GO:0003700|GO:0006355
Gso4g0897 314 PRINTS Ethylene responsive element binding protein signature 161 177 IPR001471 GO:0003700|GO:0006355
Gso4g0897 314 MobiDBLite consensus disorder prediction 233 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0897 Gso-Chr4 9744456 9746204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0897 1 314 AP2-EREBP Transcription Factor Family AT1G78080 52.890 6.12e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso4g0897 AP2 6.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0897 K09286 - gmx:732559 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0897 4 9744456 9746204 Gso4g0897 4 9744456 9746204 ECH
Gso4g0897 4 9744456 9746204 Gso6g0885 6 8442519 8444202 GST
Gso14g1438 14 44783594 44785396 Gso4g0897 4 9744456 9746204 PCT
Gso13g0617 13 20089184 20091007 Gso4g0897 4 9744456 9746204 PCT
Gso4g0897 4 9744456 9746204 Gso14g1438 14 44783594 44785396 PCT
Gso4g0897 4 9744456 9746204 Gso13g0617 13 20089184 20091007 PCT