Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0894 ATGATGACGAACCAAAATGTGGTGACTCATGAGGTTATTAACACGTTGATTGCCGTGGCAGCTTCCATTTCAAACTCAACCGCGTTGCCAAGTGCAACAGTGCCAGAATCCATGGCTGTGCTTGGTGGGTTTTGGGGGCTGCCCCATAATAAAAATCTTGTGAAAAGGTTGGAAGGAGCTAAAGTTAGTGCTTGGATTGATTCAATGAGAGCTTCTTCCCCAACTCGTGCCAAATCAGAAAGCCAAGAAAAAAGATCTTGGATTCTTTATCACCCTTCAGCTCTGAACACGTTTGAGCAAATAGTATGTAGTGCCAAAGGAAAGCAAGTCGTAGTTTTTCTTGACTACGATGGAACTCTCTCCCCAATTGTTGCAGATCCGGATAAAGCTTTCATGACTAGAAAGATGAGAGCAACGCTAAAGGGCATAGCAAGGCATTTTCCCACAGCAATAGTGACCGGAAGGTGCAGAGACAAGGTATATAACTTTGTAAAATTGGCAGAACTTTACTATGCCGGAAGCCATGGCATGGACATCAAGGGTCCAACAAAAAGCCAAAGTCCAAAGCAAGGTAATAATAATAAAGCAGTGCTGTTCCAACCCGCGAGTCAATTCCTGCCAATGATCGATGAGGTGTACAAGATCTTGTTAGAAAAAACAAAGACTGTCCCAGGGGCTAATGTTGAGAACAATAAGTTTTGCTTGTCCGTGCACTTTCGTTGTGTTGACGAAAAGAGTTGGGCAGCGTTGGCGGAGAAAGTTAGATTGGTGCTCAATGATTACCCACAACTTAGGCTAACCCAAGGGAGAAAAGTGCTAGAGATTCGTCCAACCATCAAATGGGACAAGGGCAAGGCTCTTGAATTTTTGTTAGAATCATTAGGATACGAGAATTCGAATGATGTATTTCCAATATATATTGGTGATGATCGAACTGATGAGGATGCTTTTAAGGTTTTGCGCAGTAGGGGTCAAGGAATTGGGATTCTTGTTTCTAGAGTTGCAAAAGAAACAGATGCTTCCTATACCTTGCAAGATCCATCAGAGGTTGAGCAATTCTTGCGGCGTCTGGTGGAGTGGAAAAGACCGAGTACTGTGACTCCCACAAGTGTATAG 1116 0.4346 MMTNQNVVTHEVINTLIAVAASISNSTALPSATVPESMAVLGGFWGLPHNKNLVKRLEGAKVSAWIDSMRASSPTRAKSESQEKRSWILYHPSALNTFEQIVCSAKGKQVVVFLDYDGTLSPIVADPDKAFMTRKMRATLKGIARHFPTAIVTGRCRDKVYNFVKLAELYYAGSHGMDIKGPTKSQSPKQGNNNKAVLFQPASQFLPMIDEVYKILLEKTKTVPGANVENNKFCLSVHFRCVDEKSWAALAEKVRLVLNDYPQLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGYENSNDVFPIYIGDDRTDEDAFKVLRSRGQGIGILVSRVAKETDASYTLQDPSEVEQFLRRLVEWKRPSTVTPTSV* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0894 371 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 112 322 IPR006379 -
Gso4g0894 371 SUPERFAMILY HAD-like 111 360 IPR036412 -
Gso4g0894 371 TIGRFAM T6PP: trehalose-phosphatase 107 358 IPR003337 GO:0003824|GO:0005992
Gso4g0894 371 Pfam Trehalose-phosphatase 113 348 IPR003337 GO:0003824|GO:0005992
Gso4g0894 371 Gene3D - 110 208 IPR023214 -
Gso4g0894 371 Gene3D - 225 367 IPR023214 -
Gso4g0894 371 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 2 365 - -
Gso4g0894 371 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 2 365 IPR044651 GO:0004805|GO:0005992
Gso4g0894 371 CDD HAD_TPP 111 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0894 Gso-Chr4 9695606 9698451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0894 106 357 Trehalose Biosynthesis Gene Families AT1G70290 26.296 6.95e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0894 K01087 - gmx:100788641 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0894 4 9695606 9698451 Gso6g0883 6 8426108 8429126 GST
Gso14g1440 14 44820389 44823476 Gso4g0894 4 9695606 9698451 PCT
Gso13g0619 13 20141192 20144181 Gso4g0894 4 9695606 9698451 PCT
Gso4g0894 4 9695606 9698451 Gso14g1440 14 44820389 44823476 PCT
Gso4g0894 4 9695606 9698451 Gso13g0619 13 20141192 20144181 PCT