Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0874 ATGGGAAGATCCCCATGCTGCGATGAGAATGGCCTTAAGAAAGGTCCCTGGACTCCCGAAGAAGATCAAAAGCTAGTCCAACATATTCAGAAACATGGCCATGGTAGTTGGAGAGCCCTCCCTAAGCAAGCTGGTCTCAACAGATGTGGAAAAAGTTGTAGGCTAAGGTGGACTAACTATTTAAGGCCTGATATCAAGAGGGGGAAGTTTTCTCAAGAAGAGGAGCAAACAATTCTGCATCTCCATTCCATCCTTGGAAACAAATGGTCATCAATTGCAACCCACCTTCCAGGCAGGACAGACAATGAGATCAAGAATTTCTGGAACACTCACTTAAAGAAAAAGCTGATTCAGATGGGTTTTGATCCAATGACTCACCAGCCTAGAACTGACCTTGTTTCCACCTTGCCATATCTGCTAGCTTTGGCTAATATGACAGACCTTATGGATCATCATCAGACATTGGATGAACATGCTATGAGGTTGCAAGCAGAGGCAGTCCAGTTGGCAAAGCTTCAATACCTTCATTATCTAATCCAATCCTCAAACTCCTTGAGCACCACCAACTCCTATGACCAAAATGCCACCACCACAACCAACATGGAACCTACTGCTGCTTTCAGTTTGTTGAACTCAATCTCCAATGTGAAAGAGGATCCAGTCATGTTGCAACAAGATGATACTCCTGGTGCCTCATTTTCTCATGGCATTGCTAGCTCTCAACCACTCCACCACCCAAACGTGCTACCTCACCCTTTAGACCCACAAGTCTCTTTCAGTTCTCAATCATGTTTGAATAGCGAGATGGGTCAAGGTACTAACTTTGCAATCATAAGTCAAGGGGATCACACGGTTGATCATGACTACTCTTCCTGGATTATTCCATCTATTACTCCTCCAAATTCAATAGGGACCTCAGCTAACAATCCAGGAGACGCCAGCAGCAGCACTTCTAGCTATGCAGGAGGACCCTCTTCTTATTGGTCTGAACTACTTTTTGAGGACCCCATCTTGCATGAGCTATCTTAG 1029 0.448 MGRSPCCDENGLKKGPWTPEEDQKLVQHIQKHGHGSWRALPKQAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSSIATHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSTLPYLLALANMTDLMDHHQTLDEHAMRLQAEAVQLAKLQYLHYLIQSSNSLSTTNSYDQNATTTTNMEPTAAFSLLNSISNVKEDPVMLQQDDTPGASFSHGIASSQPLHHPNVLPHPLDPQVSFSSQSCLNSEMGQGTNFAIISQGDHTVDHDYSSWIIPSITPPNSIGTSANNPGDASSSTSSYAGGPSSYWSELLFEDPILHELS* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0874 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso4g0874 342 CDD SANT 69 112 IPR001005 -
Gso4g0874 342 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso4g0874 342 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso4g0874 342 CDD SANT 16 61 IPR001005 -
Gso4g0874 342 Gene3D - 69 116 - -
Gso4g0874 342 MobiDBLite consensus disorder prediction 223 252 - -
Gso4g0874 342 SMART sant 66 114 IPR001005 -
Gso4g0874 342 SMART sant 13 63 IPR001005 -
Gso4g0874 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso4g0874 342 PANTHER TRANSCRIPTION FACTOR MYB39-LIKE 1 268 - -
Gso4g0874 342 Gene3D - 13 66 - -
Gso4g0874 342 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso4g0874 342 MobiDBLite consensus disorder prediction 223 241 - -
Gso4g0874 342 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso4g0874 342 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso4g0874 342 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0874 Gso-Chr4 9409902 9411584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0874 1 342 MYB Transcription Factor Family AT1G34670 54.447 1.33e-121 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso4g0874 Myb_DNA-binding 6.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0874 K09422 - gmx:100782792 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0874 4 9409902 9411584 Gso4g0874 4 9409902 9411584 ECH
Gso4g0874 4 9409902 9411584 Gso6g0868 6 8261668 8263336 GST