Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0871 ATGGACAAGTTATGCTGTTTTAAGGATTCATACTCTCAGCTTGTAGCAGCACGTTCTTCGTCCAGCACTGGTAAGGGGAAAAATCATGAAGGCTCAATAAAGTATGGTTTCAGCCTTGTAAAAGGGAAAGCTAATCACCCAATGGAGGATTATCATGTTGCCAAGTTTGCGCAGATACAGGATAATGAATTGGGTTTATTTGCAATTTATGATGGTCACGTGGGTGACCGTGTGCCTGCCTACTTACAGAAACATTTGTTTACCAACATTTTGAGGGAGGAGGAATTTTGGGAGGACCCCACTCTTTCTATCTCGAAAGCATATGAGAGCACAGATCAGGAAATTCTATCACATAGTTCTGATCTTGGGCGTGGTGGATCAACGGCAGTAACTGCTATATTGATCAATGGGCGAAGGTTATGGATAGCTAATGTTGGAGACTCACGAGCTGTTCTTTCAAGAAAAGGTCAAGCTGTACAAATGACTACAGACCATGAGCCTAACACAGAACGAGGCAGCATTGAGACTAGAGGTGGTTTTGTGTCTAACTTGCCAGGTGATGTGCCTAGAGTAAATGGAAAACTTGCTGTTTCTCGTGCATTTGGAGACAAGAGTCTCAAGTCACATTTGCGATCAGACCCTGATGTACAGAATACTGATGTAGATGTTGATACTGAGATTCTAATCCTTGCAAGTGATGGAATTTGGAAGGTAATGACTAATCAAGAGGCAGTGGATATCGCTAGAAGAACAACGAGAGACCCGCAGAAAGCAGCTAAACAACTAACAGCTGAAGCATTAAAAAGAGATAGTAAAGATGATATATCTTGTGTTGTGGTTAAATTCAGATGA 852 0.4178 MDKLCCFKDSYSQLVAARSSSSTGKGKNHEGSIKYGFSLVKGKANHPMEDYHVAKFAQIQDNELGLFAIYDGHVGDRVPAYLQKHLFTNILREEEFWEDPTLSISKAYESTDQEILSHSSDLGRGGSTAVTAILINGRRLWIANVGDSRAVLSRKGQAVQMTTDHEPNTERGSIETRGGFVSNLPGDVPRVNGKLAVSRAFGDKSLKSHLRSDPDVQNTDVDVDTEILILASDGIWKVMTNQEAVDIARRTTRDPQKAAKQLTAEALKRDSKDDISCVVVKFR* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0871 283 SMART PP2C_4 30 280 IPR001932 -
Gso4g0871 283 PANTHER PROTEIN PHOSPHATASE 2C 1 282 IPR015655 GO:0004722|GO:0006470
Gso4g0871 283 MobiDBLite consensus disorder prediction 156 178 - -
Gso4g0871 283 CDD PP2Cc 33 282 IPR001932 -
Gso4g0871 283 ProSitePatterns PPM-type phosphatase domain signature. 66 74 IPR000222 GO:0043169
Gso4g0871 283 Gene3D - 13 283 IPR036457 -
Gso4g0871 283 ProSiteProfiles PPM-type phosphatase domain profile. 34 282 IPR001932 -
Gso4g0871 283 SUPERFAMILY PP2C-like 32 282 IPR036457 -
Gso4g0871 283 PANTHER PROTEIN PHOSPHATASE 2C 10-RELATED 1 282 - -
Gso4g0871 283 SMART PP2C_SIG_2 45 282 IPR001932 -
Gso4g0871 283 Pfam Protein phosphatase 2C 43 275 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0871 Gso-Chr4 9340283 9343925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0871 1 283 PP2C-type Phosphatase Gene Family AT1G22280 74.394 6.19e-153 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0871 K17506 - gmx:100815565 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0871 4 9340283 9343925 Gso4g0871 4 9340283 9343925 ECH
Gso4g0871 4 9340283 9343925 Gso6g0866 6 8233562 8237219 GST