Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0839 ATGGCGCTACTACGTCTTGTTTGCTTAACTTCAACAAATCAGTTATCAACTCAATCCACCTCTTTCTCTTTTCTTCGCAAAACACCCCATTCTCAATACATCCATATCAATCCCTCTTCCTTTCACTTTCCACGCCTATCCCTTATCGCAACCACTCTCACACACGCCCAACAACAAACCCAACAAGCCGACCCTGTTGTCGCCGAAGAAGAATTTTCTCGCACCAGGTTACTCGCTCAGAACGTGCCCTGGACAAGCACCCCCGAAGATATTCGCTCTTTGTTCGAAAAACATGGAAAAGTCCTCCAAGTCGAGCTTTCTATGTATAAGAAAAACAGAAACCGGGGTTTGGCCTTTGTCGAAATGGGTTCCCCAGAAGAAGCACTTGAAGCTCTCAATAATCTCGAATCGTATGAGTTTGAGGGTCGTGTAATCAAAGTCAATTATGCTCGGCCGAAAAAGGAGAAAACGCCGCCCCCTGTGAAACCAAAGGTGGTGACGTTTAACTTGTTTGTTGCTAACTTGTCCTATGAAGCGAGCGCCAAAGATCTCAAGGAGTTTTTTGATTCTGGAACTGGTAAAGTTGTGTCTGCTGAGGTTGTGTATCGTGATAATCCTAGAAGGCCGTCTGGTTATGGATTTGTGTCCTACAAGTCCAAGAAAGAAGCTGAGGCTGCTCTTGCTGAGTTCCAAGGAAAGATTTTTATGGGAAGGCCAATCAGGGTGGATCGGGGTCGGCGATTTGTTCAACAACCAGGGGACGGGAGTGCAAAGTCTGAAGATACACCTTCTGATTTGAGTGTGAATGGGGCAAAAGCTCAACAACCTGCAGAGGGCAGTGCAAAGTCTGAAGATACTCCTTCTGAGTTGAGCGTGAATGGGGAAGAAGCTGACAAAGTTGATTGA 906 0.4614 MALLRLVCLTSTNQLSTQSTSFSFLRKTPHSQYIHINPSSFHFPRLSLIATTLTHAQQQTQQADPVVAEEEFSRTRLLAQNVPWTSTPEDIRSLFEKHGKVLQVELSMYKKNRNRGLAFVEMGSPEEALEALNNLESYEFEGRVIKVNYARPKKEKTPPPVKPKVVTFNLFVANLSYEASAKDLKEFFDSGTGKVVSAEVVYRDNPRRPSGYGFVSYKSKKEAEAALAEFQGKIFMGRPIRVDRGRRFVQQPGDGSAKSEDTPSDLSVNGAKAQQPAEGSAKSEDTPSELSVNGEEADKVD* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0839 301 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 1 274 - -
Gso4g0839 301 SUPERFAMILY RNA-binding domain, RBD 167 252 IPR035979 GO:0003676
Gso4g0839 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 241 IPR000504 GO:0003723
Gso4g0839 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 146 IPR000504 GO:0003723
Gso4g0839 301 MobiDBLite consensus disorder prediction 249 301 - -
Gso4g0839 301 SUPERFAMILY RNA-binding domain, RBD 59 160 IPR035979 GO:0003676
Gso4g0839 301 PANTHER OS08G0483200 PROTEIN 1 274 - -
Gso4g0839 301 Gene3D - 161 283 IPR012677 -
Gso4g0839 301 CDD RRM_SF 170 243 - -
Gso4g0839 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 247 IPR000504 GO:0003723
Gso4g0839 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 75 152 IPR000504 GO:0003723
Gso4g0839 301 SMART rrm1_1 76 148 IPR000504 GO:0003723
Gso4g0839 301 SMART rrm1_1 169 243 IPR000504 GO:0003723
Gso4g0839 301 Gene3D - 50 159 IPR012677 -
Gso4g0839 301 MobiDBLite consensus disorder prediction 255 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0839 Gso-Chr4 8905458 8907788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0839 75 250 Eukaryotic Initiation Factors Gene Family AT3G16380 29.167 5.26e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0839 - - gmx:100806480 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0839 4 8905458 8907788 Gso4g0839 4 8905458 8907788 ECH
Gso4g0839 4 8905458 8907788 Gso6g0840 6 7998662 8000919 GST