Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0837 ATGGCACTAGAGGCTGTGGTTTTCCCGCAAGATCCATTCACATATGGTTGCGACAAGGATTATTTGTACTCCTTAGTAGAACACAACTATGGTAATTTCCAAGCAGCGGAAGAAGAGAAAGTCCTCCTAGGAATCATCAACAACAACATAGAACACAACTTTCATGCAAACTGGGATTCATCTTCTACCTCAATGTTGCAAAACGTCAAGGAACAACAATGGGATTCTCACTCCTCCCCTGAAGCATGCACCGTTGATCAATCCATGACCACCGCTCCTTTCCCTCCTCCTCCTTCTTCCTCCGTGGAAGCCACCGTGACTGCCACGAGTCGCCGTAAACGACGCCGCACCAAGAGCGCCAAGAACACGGAGGAAATCGAGAACCAGAGGAGGACCCACATTGCTGTTGAACGCAACCGCCGAAAACAGATGAATGAGTACTTGGCCGTGCTCCGATCCTTGATGCCTTCTTCTTATGTTCAAAGGGGTGACCAAGCGTCTATTATTGGAGGGGCCATAAACTTTGTGAAGGAGTTGGAGCAGCTTTTGCAGTCGATGGAGGGTCAAAAGAGAACGAACCAAGCGCAAGAGAATGTTGTTGGGTTAAATGGGTCGACAACAACACCCTTTGCTGAGTTCTTCACGTTTCCTCAATACACGACACGTGGCAGGACGATGGCACAGGAGCAGAAACAGTGGGCTGTAGCAGACATTGAAGTGACCATGGTGGATAGCCATGCGAATCTAAAGGTACTCTCAAAGAAACAACCTGGGCAGCTTATGAAGATCGTTGTTGGGCTTCAAAGTCTCATGCTCAGCATTCTCCACCTTAATGTTTCCACTCTTGACGACATGGTCCTTTACTCAATTAGCGTCAAGGTAGAGGACGGGTGTCGGCTGAACACGGTGGATGAAATTGCGGCTGCAGTGAATCAGCTATTACGCACAATCCAAGAAGTTACTTTCAGCTGA 972 0.4825 MALEAVVFPQDPFTYGCDKDYLYSLVEHNYGNFQAAEEEKVLLGIINNNIEHNFHANWDSSSTSMLQNVKEQQWDSHSSPEACTVDQSMTTAPFPPPPSSSVEATVTATSRRKRRRTKSAKNTEEIENQRRTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQLLQSMEGQKRTNQAQENVVGLNGSTTTPFAEFFTFPQYTTRGRTMAQEQKQWAVADIEVTMVDSHANLKVLSKKQPGQLMKIVVGLQSLMLSILHLNVSTLDDMVLYSISVKVEDGCRLNTVDEIAAAVNQLLRTIQEVTFS* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0837 323 Pfam Helix-loop-helix DNA-binding domain 129 180 IPR011598 GO:0046983
Gso4g0837 323 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 319 - -
Gso4g0837 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 199 IPR036638 GO:0046983
Gso4g0837 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 128 179 IPR011598 GO:0046983
Gso4g0837 323 CDD bHLH_AtFAMA_like 132 198 - -
Gso4g0837 323 PANTHER MAX DIMERIZATION, MAD 1 319 - -
Gso4g0837 323 SMART finulus 134 185 IPR011598 GO:0046983
Gso4g0837 323 Gene3D - 109 197 IPR036638 GO:0046983
Gso4g0837 323 Coils Coil 176 199 - -
Gso4g0837 323 MobiDBLite consensus disorder prediction 80 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0837 Gso-Chr4 8878624 8880597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0837 1 294 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.220 4.71e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso4g0837 HLH 4.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0837 - - gmx:100805420 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0837 4 8878624 8880597 Gso4g0837 4 8878624 8880597 ECH
Gso4g0837 4 8878624 8880597 Gso6g0838 6 7986526 7988498 GST
Gso14g1497 14 46203850 46207543 Gso4g0837 4 8878624 8880597 PCT
Gso2g1793 2 41678557 41682083 Gso4g0837 4 8878624 8880597 PCT
Gso4g0837 4 8878624 8880597 Gso14g1497 14 46203850 46207543 PCT
Gso4g0837 4 8878624 8880597 Gso2g1793 2 41678557 41682083 PCT