Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0836 ATGACCACTTTCACACACTCCATTTTCCACCATGACCTTCTTTTTCTTTTCTATTTCTTTCTCCTCACGGAATTTCCGCCGCAGGCCACCGCGCAGCCTCCGAACACGCTGACGCCGCCGCCGCAGCAGGACCGCTTTACGAGGCTGAAGTTCGACAAATCCATGGCCATCGTTCTGCTGATCCTGGTGGTGGTGTTCTTCATCCTAGGGTTCCTCTCCGTGTACACGCGCCAGTGCGCGGAGCGCAGGATGGGAGGGAGGTTCGACCTCTCCATCTCGATCTCGCGCCGGCAACGCGGCCTCGGCCGCGAAGTCATCGAAACGTTCCCGACGTTCGTGTACTCCACCGTGAAGAGCCTCAAGATAGGGCGCGCCACGCTAGAATGCGCCGTGTGCCTAAACGAGTTCGAGGAGGATGAAACGCTGCGTTTCATCCCCAACTGCAGCCACGTGTTCCACTCCGACTGCATCGACGCGTGGCTCGCAAACCACTCCACTTGCCCCGTCTGTCGCGCCAATCTTACTTCCAAACCCGATGACCGGTGTTCTGCTCCTATCCAAAACCCGGATCCGGAGCAGCCCGTTTTAACCTCATCAACCCGACCCGAAACCGTGGGTGCTGATTTGCTTAGTCAGAACCGTACACCGCCGCGACCATGGTCAACGGGTCTTAGTATCGCGAGTTGGTTTCCGCGGTCTCACTCGACGGGGCACTCGCTGGTTCAACCCGGGGAGAATTGTGAACGGTTTACGCTGCGTTTGCCTGAGGAAGTGCGGAACGAGCTTATGCTGAGTCGCACCAAGAGTTGCGGCGTGAGCGTGACGTTCACGCGCGAGAATAGTGGAAGGAGGGGTTACAGGGCAAGGAGCCTTGGTAGCAGCCTCAGCCCTCACGTGACAAGAAACAGCACCAGTCCTCACGTTAGGGGGTGGTTTTCTCGGCCACGCTCGATTAAGGATGATGTCGGGGAACGGTCTTCGGATCGGTTATTCTCCACGACAAGGGATATTAGTGAGGTTTAG 1023 0.5748 MTTFTHSIFHHDLLFLFYFFLLTEFPPQATAQPPNTLTPPPQQDRFTRLKFDKSMAIVLLILVVVFFILGFLSVYTRQCAERRMGGRFDLSISISRRQRGLGREVIETFPTFVYSTVKSLKIGRATLECAVCLNEFEEDETLRFIPNCSHVFHSDCIDAWLANHSTCPVCRANLTSKPDDRCSAPIQNPDPEQPVLTSSTRPETVGADLLSQNRTPPRPWSTGLSIASWFPRSHSTGHSLVQPGENCERFTLRLPEEVRNELMLSRTKSCGVSVTFTRENSGRRGYRARSLGSSLSPHVTRNSTSPHVRGWFSRPRSIKDDVGERSSDRLFSTTRDISEV* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0836 340 SUPERFAMILY RING/U-box 123 178 - -
Gso4g0836 340 SMART ring_2 129 170 IPR001841 -
Gso4g0836 340 MobiDBLite consensus disorder prediction 180 202 - -
Gso4g0836 340 MobiDBLite consensus disorder prediction 293 310 - -
Gso4g0836 340 Pfam Ring finger domain 128 171 IPR001841 -
Gso4g0836 340 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Gso4g0836 340 MobiDBLite consensus disorder prediction 285 311 - -
Gso4g0836 340 CDD RING-H2_PA-TM-RING 128 171 - -
Gso4g0836 340 PANTHER RING FINGER DOMAIN-CONTAINING 13 273 - -
Gso4g0836 340 PANTHER RING-H2 FINGER PROTEIN ATL11 13 273 - -
Gso4g0836 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 177 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0836 Gso-Chr4 8850873 8852527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0836 1 290 Rapid Response to Elicitors AT3G05200 39.432 2.32e-62 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0836 K10664 - gmx:100815936 637.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0836 4 8850873 8852527 Gso4g0836 4 8850873 8852527 ECH