Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0825 ATGAGGAAGAAAAGGAAAGGAAGCGAGACTGATGGGTCTGCGGATCTGGCTGTTATTTTGGCTCCTAATCATGGCTCTGCTTCATCGAATTTAAAGTCCCATTACTCGCTAGAGGATTGTTGTAGGCTGAAGAAGAGGTGTTGTAAGGAGGAGGATGTTGACACTGAGCCAGCTACATCCTTTAAGAGGAGGCTTGCTGGCATTGCTACTGCCCCGCCTTGCGGGACGTCGTCTTTGATCACGCCGGGGAGAGGGCTCAAGAGGAAGATAGGTTGCATTGATGTCGCTACCCAGATGGGCAGGAAGAAAAAGATCGAGGATGATTATGTGTCTGGGGAGACAATTGGCCAAGGCAAGTTCGGGTCTGTTTGGTTGTGTAGGTCAAAGGTTAGTGGAGCAGAATATGCATGTAAGACCCTGAAGAAGGGGGAGGAAACAGTTCATCGAGAGGTTGAGATCATGCAACACTTGTCTGGACATTCTGGGGTTGTTACACTGCAAGCTGTTTATGAAGAAGCTGAATGCTTTCATCTTGTGATGGAACTTTGCTCTGGGGGACGGCTCATTGATCGGATGGTTGAGGATGGTCCGTATTCGGAACAGAGGGCTGCTAATGTACTCAAGGAAGTGATGTTGGTCATCAAGTATTGTCATGACATGGGAGTTGTGCACAGAGATATCAAACCTGAGAATATTCTGCTCACGGCATCTGGAAAAATTAAGCTTGCAGATTTTGGCTTGGCCATGAGAATTTCAGAAGGTCAGAACTTAACTGGTTTGGCTGGAAGTCCTGCCTATGTTGCCCCAGAAGTATTGTTAGGCAGATACTCTGAGAAGGTGGATATATGGAGTGCTGGAGTGCTCCTGCATGCTCTGTTGGTTGGCAGTCTTCCATTTCAAGGAGATTCATTGGAAGCAGTTTTTGAGGCTATTAAGACCGTCAAATTAGATTTCCAAAATGGGATGTGGGAATCAATATCTAAACCTGCACGAGACCTTATTGGGAGAATGCTGACAAGGGATATTTCAGCAAGGATATCAGCTGACGAAGTACTTAGACATCCATGGATATTGTTCTACACGGCAAATACATTGAAAATGCTGCCCATCAAAACAAAATTCAAGAACCAAATTGGTGCCTCATGCCAACAGCTTGTTGCGGTACCTGAACCAAGGTTAGGAGGAAACAGGATAGATACTTACTCACTTAGGGAGGGTTCATCCTCTGAAAGTTGCAATTCAGATGATCAGGATGAATGTGTGTTGATTGATGTGCTTGCCTCTGCAATTTCACACGTGAGGATATCTGAACCAAAGAGGAGCAGGGTGTGTGGTCCCACAGGCCCGATAGTTCAACAAGGTTCATCTAACATGAAGCCTAACAACCTCTGTAAAGCATTTTGA 1404 0.4573 MRKKRKGSETDGSADLAVILAPNHGSASSNLKSHYSLEDCCRLKKRCCKEEDVDTEPATSFKRRLAGIATAPPCGTSSLITPGRGLKRKIGCIDVATQMGRKKKIEDDYVSGETIGQGKFGSVWLCRSKVSGAEYACKTLKKGEETVHREVEIMQHLSGHSGVVTLQAVYEEAECFHLVMELCSGGRLIDRMVEDGPYSEQRAANVLKEVMLVIKYCHDMGVVHRDIKPENILLTASGKIKLADFGLAMRISEGQNLTGLAGSPAYVAPEVLLGRYSEKVDIWSAGVLLHALLVGSLPFQGDSLEAVFEAIKTVKLDFQNGMWESISKPARDLIGRMLTRDISARISADEVLRHPWILFYTANTLKMLPIKTKFKNQIGASCQQLVAVPEPRLGGNRIDTYSLREGSSSESCNSDDQDECVLIDVLASAISHVRISEPKRSRVCGPTGPIVQQGSSNMKPNNLCKAF* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0825 467 PANTHER SERINE/THREONINE-PROTEIN KINASE 24 459 - -
Gso4g0825 467 CDD STKc_CAMK 108 356 - -
Gso4g0825 467 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Gso4g0825 467 Gene3D Transferase(Phosphotransferase) domain 1 100 391 - -
Gso4g0825 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Gso4g0825 467 PANTHER SERINE/THREONINE-PROTEIN KINASE PEPKR2 24 459 - -
Gso4g0825 467 SMART serkin_6 109 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0825 467 Pfam Protein kinase domain 109 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0825 467 SUPERFAMILY Protein kinase-like (PK-like) 100 376 IPR011009 -
Gso4g0825 467 ProSiteProfiles Protein kinase domain profile. 109 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0825 Gso-Chr4 8744417 8747692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0825 101 357 EF-hand Containing Proteins AT4G35310 44.569 1.44e-78 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso4g0825 Pkinase 1.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0825 - - gmx:100812729 927.932
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0825 4 8744417 8747692 Gso4g0825 4 8744417 8747692 ECH
Gso4g0825 4 8744417 8747692 Gso6g0832 6 7922461 7927045 GST
Gso14g1509 14 46417634 46420944 Gso4g0825 4 8744417 8747692 PCT
Gso2g1800 2 41792095 41795353 Gso4g0825 4 8744417 8747692 PCT
Gso4g0825 4 8744417 8747692 Gso14g1509 14 46417634 46420944 PCT
Gso4g0825 4 8744417 8747692 Gso2g1800 2 41792095 41795353 PCT