Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0819 ATGGCGACCGTGAATCCGCAGCCTCTGCAGTTCGAGGACCCAGCGATACCCGTCGACGAAGACGATGACGACGACGACGACGGTGGTGATGATGACGCTATGGATGAGTTGGAGGATGCGAATGTTAACTCAGTGAACGTTACTAATGCCGCGAGTGTAAATTATGAAGCGGTAGTGGCTATGCCTTCCAGAACTAGCGAGCTCACTCTTTCTTTCGAGGGAGAAGTTTATGTCTTTCCCGCTGTCACTCCTCAGAAGGTGCAAGCTGTCTTGCTGCTTTTGGGAGGACGTGATGTGCAGGCAAGTGTGCCAGCAGTTGAACCACCATTTGATCAAAGTAACAGGGACATGGGTGATACTCCAAAGCGTTCAAACCTTTCACGAAGAATAGCATCCTTGGTCAGGTTCCGCGAGAAACGCAAGGAAAGATGTTTTGACAAGAAAATTAGGTATTCCGTCAGAAAAGAGGTAGCACAGAGGATGCATCGGAAGAATGGGCAGTTTGCTTCCTTGAAGGAAAGCCCAGGTTCATCTAATTGGGATTCTGCACAGAGTTCTGGTCAAGTTGGCACTTCTCATTCTGAATCTGTACGTAGATGTCACCATTGTGGTGTCGGTGAAAATAATACTCCTGCAATGCGTCGGGGGCCAGCTGGACCAAGGACTTTATGTAATGCATGCGGCCTTATGTGGGCTAACAAGGGCACACTCAGAGATCTCAGTAAGGGTGGAAGGAATCTTTCTGTTGAGCAAAGTGATCTGGACACTCCTATTGATGTCAAGCCTACTTCTGTTCTTGAAGGGGAATTGCCTGGCATCCATGATGAGCAAGGTAGTTCTGAAGATCCTTCCAAGTCCAATGCAGCGGATGGTTCTAGTAATCATGCTGTAAACCCCAGTGATGAGGAATTGCCTGAAACTGCAGAACACTTTACGAACGTTCTGCCACTGGGAATTGGTCATTCTTCAACAAATGACAGTGAACAGGTGATATGCTATGCCACTCAAGGATGGGTTGCTAATTTGAATATCAACGTAGCGGTGTGCTAA 1050 0.4771 MATVNPQPLQFEDPAIPVDEDDDDDDDGGDDDAMDELEDANVNSVNVTNAASVNYEAVVAMPSRTSELTLSFEGEVYVFPAVTPQKVQAVLLLLGGRDVQASVPAVEPPFDQSNRDMGDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKESPGSSNWDSAQSSGQVGTSHSESVRRCHHCGVGENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVEQSDLDTPIDVKPTSVLEGELPGIHDEQGSSEDPSKSNAADGSSNHAVNPSDEELPETAEHFTNVLPLGIGHSSTNDSEQVICYATQGWVANLNINVAVC* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0819 349 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 244 - -
Gso4g0819 349 SMART tify_2 61 96 IPR010399 -
Gso4g0819 349 MobiDBLite consensus disorder prediction 240 304 - -
Gso4g0819 349 MobiDBLite consensus disorder prediction 163 196 - -
Gso4g0819 349 Gene3D - 191 251 IPR013088 GO:0006355|GO:0008270
Gso4g0819 349 ProSitePatterns GATA-type zinc finger domain. 200 227 IPR000679 GO:0006355|GO:0043565
Gso4g0819 349 CDD ZnF_GATA 199 243 IPR000679 GO:0006355|GO:0043565
Gso4g0819 349 Pfam tify domain 63 95 IPR010399 -
Gso4g0819 349 MobiDBLite consensus disorder prediction 15 34 - -
Gso4g0819 349 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 315 - -
Gso4g0819 349 MobiDBLite consensus disorder prediction 282 300 - -
Gso4g0819 349 Pfam GATA zinc finger 200 236 IPR000679 GO:0006355|GO:0043565
Gso4g0819 349 PANTHER GATA TRANSCRIPTION FACTOR 28 1 315 IPR045280 GO:0006355
Gso4g0819 349 Pfam CCT motif 129 170 IPR010402 GO:0005515
Gso4g0819 349 ProSiteProfiles CCT domain profile. 129 171 IPR010402 GO:0005515
Gso4g0819 349 SMART GATA_3 194 247 IPR000679 GO:0006355|GO:0043565
Gso4g0819 349 MobiDBLite consensus disorder prediction 170 194 - -
Gso4g0819 349 ProSiteProfiles Tify domain profile. 61 96 IPR010399 -
Gso4g0819 349 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0819 Gso-Chr4 8567481 8581147 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0819 5 242 Tify Gene Family AT1G51600 50.196 1.87e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso4g0819 CCT 1e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0819 - - gmx:100801328 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0819 4 8567481 8581147 Gso6g0825 6 7825597 7832558 GST