Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0818 ATGTTCGGCTCCATCAACCAGATCGTCTCCGCCGAAGACACCGACGGCCCCGTCTCCGACCACCACATCCATTACAGTTCCCACACCATCGAAGACGACGGCGCCGCCTCCGATCACCACATCCATTACAGTTCCCACACCATCGAAGAAGACGGCACCGCCTCCGACCACCACATCCATTACAGTTCCCACACCATCGAAGACGATGGCGCCGCTGTCGAAGACGTTTCCGCCGTTCCGGGCCCTGAAATCTCTATCGACAATTCTAGCCAGCTCACGCTCTCGTTTCGCGGCCAAGTCTATGTCTTCGATGCTGTTACACCTGATAAGGTTCAAGCAGTGTTGTTGCTGCTGGGAGGAAATGAACTAACTTCGGGTTCGCAATGTGCGGAGCTATCATCTCGAAATCAGACTGGTGAGGAGGAATATCCTGCAAAATGTAGTCTACCACATCGAGCAGCGTCATTGAATAGGTTCCGTCAGAAGAGGAAAGAGCGGTGCTTTGATAAGAAAGTTAGATATAGTGTACGTCAAGAAGTTGCACTCAGGATGCATCGAAATAAGGGTCAATTTACTTCATCAAAGAATCAGGATGGAACTAATAGTTGGGGTTCAGATCAAGAGTCAGGGCAGGATGCTGTTCAATCAGAAACCTTGTGCTGCACACATTGTGGAATAAGTTCAAAATCCACTCCAATGATGCGTAAGGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTTTTTTGGGCAAATAGGGGCACTTTGAGGGATCTTTCTAAGAGAAACCTGGAACACTCTCTTACACCACCTGAGCAGGTTGATGAGGGCAGTAATAATAATGACTTGGACATTCGGAGTGGCATCCCTGCACAGCATAACAATCTTGTTAATGATAGCAAAGCTTTGGTATCTGATCGTTGA 930 0.4882 MFGSINQIVSAEDTDGPVSDHHIHYSSHTIEDDGAASDHHIHYSSHTIEEDGTASDHHIHYSSHTIEDDGAAVEDVSAVPGPEISIDNSSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGNELTSGSQCAELSSRNQTGEEEYPAKCSLPHRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKNQDGTNSWGSDQESGQDAVQSETLCCTHCGISSKSTPMMRKGPSGPRSLCNACGLFWANRGTLRDLSKRNLEHSLTPPEQVDEGSNNNDLDIRSGIPAQHNNLVNDSKALVSDR* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0818 309 CDD ZnF_GATA 221 265 IPR000679 GO:0006355|GO:0043565
Gso4g0818 309 ProSitePatterns GATA-type zinc finger domain. 221 248 IPR000679 GO:0006355|GO:0043565
Gso4g0818 309 SMART tify_2 85 120 IPR010399 -
Gso4g0818 309 MobiDBLite consensus disorder prediction 187 209 - -
Gso4g0818 309 MobiDBLite consensus disorder prediction 269 309 - -
Gso4g0818 309 PANTHER GATA TRANSCRIPTION FACTOR 28 28 290 IPR045280 GO:0006355
Gso4g0818 309 ProSiteProfiles Tify domain profile. 85 120 IPR010399 -
Gso4g0818 309 Pfam GATA zinc finger 221 257 IPR000679 GO:0006355|GO:0043565
Gso4g0818 309 MobiDBLite consensus disorder prediction 274 309 - -
Gso4g0818 309 SMART GATA_3 215 268 IPR000679 GO:0006355|GO:0043565
Gso4g0818 309 ProSiteProfiles CCT domain profile. 152 194 IPR010402 GO:0005515
Gso4g0818 309 Pfam CCT motif 152 194 IPR010402 GO:0005515
Gso4g0818 309 PANTHER GATA TRANSCRIPTION FACTOR 25 28 290 - -
Gso4g0818 309 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 266 - -
Gso4g0818 309 Gene3D - 212 269 IPR013088 GO:0006355|GO:0008270
Gso4g0818 309 MobiDBLite consensus disorder prediction 185 209 - -
Gso4g0818 309 Pfam tify domain 88 119 IPR010399 -
Gso4g0818 309 ProSiteProfiles GATA-type zinc finger domain profile. 215 264 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0818 Gso-Chr4 8559739 8564680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0818 87 271 Tify Gene Family AT4G24470 66.845 1.90e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso4g0818 CCT 2.7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0818 - - gmx:100809517 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0818 4 8559739 8564680 Gso6g0824 6 7817483 7823310 GST
Gso14g1545 14 47036105 47041048 Gso4g0818 4 8559739 8564680 PCT
Gso2g1836 2 42341202 42345705 Gso4g0818 4 8559739 8564680 PCT