Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0816 ATGCCTCACAGAACCACATACATTTTCCCGCGTCAGTTTCCGGAGCGAGGAGGGTTGGATGAATCTTCCAAACAGCTATTAGATCACGAGAAAAAAAAGATCGTCAACTCAATCAAACATGACACGTTTACCGCCGAAAGCGACCCTCCCAAAAAGTCACCTCCAACCAAAGACAACGACGTTGTCGTTCTCTCCTCCGCCAAGCACTCCGCCGTCTCCTACCTCTTCGCTGCCGGCGACAAGTTCCGAACAAAGCACAAGCAAATCGCCGCGTTCTCCGATTGGCTGACCGACAAGAAAGCAAGCAGCCAGTGCAGCCCCCGCCACCACGACCGCGACCTACTTCTTCCGCCGGAAACCACCGTCAAGGATGCCGCCGTTGACCAGAGCTTTGACCGTCAGGTTTCGCTTCCGCGGCTATCGAGCGGGAGCAGCTATGCGGGGAGCTTGTTTTCGGGGACGACGTTGGATTGCAATTTCTCCAGCGACATTAAGGAGGAAACGTCGTCGTCTCGCACGCTCACTACTATTCCCGCGCCGAGGCACAAGAATGAGGAGGAGGAGGAGGAACAGAGCACCAAGAAGTTGGCGAAGAAGTCGAAAGAAAGCTACATCTTGCAACTCACGTTAGCGAAGAGGCTCACTTGCTTGGCTACCCTCGTCACCGAACCTGTTCTCACTCCTGGAACCGAAACCTGGGATGCCGAATCCGTTTCTTATCGCCTATGGGTGAGTGGGTGTTTATCGTATACGGACAAGATATCTGATGGGTTTTATAACATATTGGGGATGAATCCGTATCTGTGGGTGATGTGCAATGATGTGGAGGAAGGTAGAAGAATACCTACTTTGATGGCGCTAAAAGCGGTTGAGCCCAGCGACACTTGTATGGAGGTGGTGCTTGTTGATAGACGCGAGGATTCTCGCTTGAAGCTGCTTCAGGATAAAGCGCAAGAGTTGTATTGTGCTTCTGAGAACACGTTGCTGTTGGTGGAACAACTAGGGAAACTTGTTGCTATTTATATGGGGGGTATGTTCCCGGTTGAGCAAGGGGATCTTCACAAGCGCTGGAAGTTGGTTAGTAAGAAGTTGAGAAATTTTCACAAGTGTGTTGTGCTTCCCATTGGCAGCCTGTCTAGTGGGCTTTGTAGGCATCGGGCTGTTCTTTTTAAGAGATTGGCAGATTATATTGGGTTGCCCTGTCGCATAGCTCGAGGTTGCAAGTACTGTGTTGCAGATCATAGATCTTCTTGCCTAGTCAAAATTAAAGATGACAAGCAGCTCTCAAGGGAATATGTGGTTGACCTAGTTGGGGAACCAGGAAATGTCCATGGGCCAGACTCCTCAATTAATGGAGCATATGTTTCTTCAATGCCTTCCCCGTTTCAAATTTCTCATTTAAAAGAATCACAATCACCCTATATGGATGACACAGCAAGTTCTATAAGTTCCAATCACAGACCTGTTAATCCTGAAAGTCTTCCATATTCAGGCTCTGAACAGAATGATCAACAACTTAATGAAACTGATTTGCTGAAAAGTCACAAGGGCTCCATTTATGCTTCAGTTGATCAAATCTGTGAAGGAACAGAACCATCTCTAATTCCTTTTGGTTTAGAAGGGAATGATGAGGAATGTGCAGTTCTTAGTTCAGTTTTGCCTACCATCCATGAAGATGTTTCAAAATCTCTTCATCCAGCCATTGAAGCATCATTACATGAATATCCAAGGCTTAGTGAAGATGTAGTGCAAGAAACTTCCCACAACGAGATAATTGTAAATGGAAGTTCTGTGGTGAAAAGTACTTTCCAGCAATCTATGCTTGGTTCATCCTGCCAGTCAGAACTGAAACAGGTAGGCATTAGAATTGAAAACCAGGGTTGTTTACCTGCTGCTGGGAATATTCCAAGATATGTAAATCTTGAACCGTCACTTGCAATGGATTGGCTTGAGATATCATGGGATGATTTAAGAATTAAAGAGCGTGTTGGTGCTGGCTCATTTGGGACAGTGTACCGTGCTGAATGGCATGGATCAGATGTTGCAGTCAAGGTTTTAACAGTTCAGGATTTCCATGATGATCAGTTGAAGGAGTTTCTGAGAGAGGTTGCAATAATGAAACGAGTTCGTCATCCAAATGTGGTGCTCTTTATGGGGTCTGTTACAAAACGCCCCCATCTATCAATAGTGACAGAGTATTTGCCTAGGGGTAGTTTATACCGCCTGATACACAGACCAGCATCTGGTGAAATTCTGGATAAGAGGAGGAGATTACGGATGGCTTTGGATGTGGCTAAAGGAATCAATTATCTCCACTGTCTGAAACCTCCAATTGTGCACTGGGATCTCAAATCCCCAAACTTGCTAGTGGATAAAAATTGGACTGCGAAGGTTTGTGATTTTGGATTGTCCAGGTTTAAGGCAAACACTTTCATACCGTCCAAATCTGTTGCTGGAACACCTGAGTGGATGGCTCCAGAATTTCTTCGCGGTGAACCCTCCAATGAGAAATCTGACGTATTCAGTTTTGGAGTTATCCTGTGGGAACTTGTGACCATGCAACAACCATGGAATGGACTTAGCCCTGCCCAGGTGGTTGGAGCTGTTGCTTTCCAGAATAGGAGGCTTGCTATCCCTCCAAACATCTCCCCGGCTTTGGCCTCCCTCATGGAATCTTGTTGGGCAGATGACCCTAGTGAACGCCCATCTTTTGGTAGCATAGTGGACTCACTAAAGAAGCTGGTAAAATCTCCAGCAGAGGTGATAAAGATGGCGGATTCATAG 2784 0.4644 MPHRTTYIFPRQFPERGGLDESSKQLLDHEKKKIVNSIKHDTFTAESDPPKKSPPTKDNDVVVLSSAKHSAVSYLFAAGDKFRTKHKQIAAFSDWLTDKKASSQCSPRHHDRDLLLPPETTVKDAAVDQSFDRQVSLPRLSSGSSYAGSLFSGTTLDCNFSSDIKEETSSSRTLTTIPAPRHKNEEEEEEQSTKKLAKKSKESYILQLTLAKRLTCLATLVTEPVLTPGTETWDAESVSYRLWVSGCLSYTDKISDGFYNILGMNPYLWVMCNDVEEGRRIPTLMALKAVEPSDTCMEVVLVDRREDSRLKLLQDKAQELYCASENTLLLVEQLGKLVAIYMGGMFPVEQGDLHKRWKLVSKKLRNFHKCVVLPIGSLSSGLCRHRAVLFKRLADYIGLPCRIARGCKYCVADHRSSCLVKIKDDKQLSREYVVDLVGEPGNVHGPDSSINGAYVSSMPSPFQISHLKESQSPYMDDTASSISSNHRPVNPESLPYSGSEQNDQQLNETDLLKSHKGSIYASVDQICEGTEPSLIPFGLEGNDEECAVLSSVLPTIHEDVSKSLHPAIEASLHEYPRLSEDVVQETSHNEIIVNGSSVVKSTFQQSMLGSSCQSELKQVGIRIENQGCLPAAGNIPRYVNLEPSLAMDWLEISWDDLRIKERVGAGSFGTVYRAEWHGSDVAVKVLTVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGSVTKRPHLSIVTEYLPRGSLYRLIHRPASGEILDKRRRLRMALDVAKGINYLHCLKPPIVHWDLKSPNLLVDKNWTAKVCDFGLSRFKANTFIPSKSVAGTPEWMAPEFLRGEPSNEKSDVFSFGVILWELVTMQQPWNGLSPAQVVGAVAFQNRRLAIPPNISPALASLMESCWADDPSERPSFGSIVDSLKKLVKSPAEVIKMADS* 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0816 927 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 111 924 - -
Gso4g0816 927 MobiDBLite consensus disorder prediction 38 55 - -
Gso4g0816 927 MobiDBLite consensus disorder prediction 169 196 - -
Gso4g0816 927 SUPERFAMILY Protein kinase-like (PK-like) 637 910 IPR011009 -
Gso4g0816 927 MobiDBLite consensus disorder prediction 179 196 - -
Gso4g0816 927 SMART serkin_6 657 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0816 927 Coils Coil 182 202 - -
Gso4g0816 927 Gene3D Transferase(Phosphotransferase) domain 1 736 924 - -
Gso4g0816 927 Gene3D Phosphorylase Kinase; domain 1 650 734 - -
Gso4g0816 927 PRINTS Tyrosine kinase catalytic domain signature 731 744 IPR001245 GO:0004672|GO:0006468
Gso4g0816 927 PRINTS Tyrosine kinase catalytic domain signature 772 790 IPR001245 GO:0004672|GO:0006468
Gso4g0816 927 PRINTS Tyrosine kinase catalytic domain signature 838 860 IPR001245 GO:0004672|GO:0006468
Gso4g0816 927 PRINTS Tyrosine kinase catalytic domain signature 882 904 IPR001245 GO:0004672|GO:0006468
Gso4g0816 927 CDD STKc_MAP3K-like 663 911 - -
Gso4g0816 927 ProSiteProfiles Protein kinase domain profile. 657 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0816 927 ProSitePatterns Serine/Threonine protein kinases active-site signature. 778 790 IPR008271 GO:0004672|GO:0006468
Gso4g0816 927 ProSitePatterns Protein kinases ATP-binding region signature. 663 684 IPR017441 GO:0005524
Gso4g0816 927 MobiDBLite consensus disorder prediction 38 59 - -
Gso4g0816 927 MobiDBLite consensus disorder prediction 469 504 - -
Gso4g0816 927 Pfam Ethylene-responsive protein kinase Le-CTR1 235 443 - -
Gso4g0816 927 Pfam Protein tyrosine and serine/threonine kinase 657 911 IPR001245 GO:0004672|GO:0006468
Gso4g0816 927 MobiDBLite consensus disorder prediction 1 24 - -
Gso4g0816 927 PANTHER SERINE/THREONINE-PROTEIN KINASE CTR1-LIKE ISOFORM X1 111 924 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0816 Gso-Chr4 8466865 8474669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0816 1 925 MAP Kinase Kinase Kinase AT4G24480 57.012 0.0 1055
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gso4g0816 PK_Tyr_Ser-Thr 2.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0816 - - gmx:100808435 1848.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1544 14 46976607 46983807 Gso4g0816 4 8466865 8474669 PCT
Gso2g1833 2 42261957 42269332 Gso4g0816 4 8466865 8474669 PCT
Gso14g0229 14 1978029 1982868 Gso4g0816 4 8466865 8474669 PCT
Gso2g2444 2 48988306 48993357 Gso4g0816 4 8466865 8474669 PCT