Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0807 ATGTCAACACTGAACCATCTTTTTGATCTTCCTGAACAGATATGTTACATACAATGTGGATTCTGTAGCACTATTTTAATGGTAAGTGTCCCATGCAGCAGTTTGTCAATGGTGGTGACAGTAAGATGCGGGCACTGCACAAGCCTCTTTTCTGTTAATATGTCGAAAGCTTCTTTTATCCCTTTCCACCTCTTAGCATCTCTTAGTCATCTTGAGCCAAAAGAAAGTAGTCCAGAAGCAGATGCTAACAAGACTTTGAACAGCCATAGTGCATCCATGATGACCTATTCTGATTGTGAGGAAGAGGATGTAATTCCAATGAGTCATCATGTTGTGAATAAACCGCCAGAGAAGAGACAACGAACACCATCTGCTTATAACTGCTTCATCAAGAAGGAGATTAAAAGGCTAAAGGCTGAAAACCCTGACATGGCCCACAAGGAAGCTTTTAGTACAGCTGCAAAAAATTGGGCCAATTTTCCCCAAACTCAGTGGTGCAGAGGAGATGAAGAGAGCTGTAGCCAGACAGATCAACTTGTGAACTCACAAGTGGACCCTCCTGATGCTGAGGTCAATGAAGAAGGTCAAGGATTCCGTGGAAGAAAGGTCCCAAGAAATTCCATCTTGGAAAGGACACAGTTTGAATGA 648 0.4259 MSTLNHLFDLPEQICYIQCGFCSTILMVSVPCSSLSMVVTVRCGHCTSLFSVNMSKASFIPFHLLASLSHLEPKESSPEADANKTLNSHSASMMTYSDCEEEDVIPMSHHVVNKPPEKRQRTPSAYNCFIKKEIKRLKAENPDMAHKEAFSTAAKNWANFPQTQWCRGDEESCSQTDQLVNSQVDPPDAEVNEEGQGFRGRKVPRNSILERTQFE* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0807 215 SUPERFAMILY HMG-box 109 163 IPR036910 -
Gso4g0807 215 Pfam YABBY protein 11 164 IPR006780 GO:0007275
Gso4g0807 215 Gene3D High mobility group box domain 108 171 IPR036910 -
Gso4g0807 215 PANTHER AXIAL REGULATOR YABBY 4 1 178 - -
Gso4g0807 215 MobiDBLite consensus disorder prediction 180 215 - -
Gso4g0807 215 MobiDBLite consensus disorder prediction 192 208 - -
Gso4g0807 215 PANTHER PROTEIN YABBY 6-RELATED 1 178 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0807 Gso-Chr4 8388002 8390556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0807 2 215 C2C2-YABBY Transcription Factor Family AT1G23420 56.195 5.97e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Gso4g0807 YABBY 1.6e-61 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0807 K25796 - gmx:100804172 445.277