Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0800 ATGACGAGGGCGAAGATAAAGATAAAGAAAATCGACAACATAACGGCGAGGCAAGTAACATTTTCTAAGAGGAGGCGAGGGCTGTTCAAGAAAGCTGAAGAGCTTTCTGTGCTATGCGATGCTGAGGTTGGTCTCATTGTTTTCTCATCTACCGGGAAGCTCTTTGATTATAGCAACGCCAGTATAAATGACATAATTACAATTTATAATACGCACTCCCATGGCGTCAACAAATTGGGCAAGCCATCACTAGAATTGCAGCTAGAGGCTGGCAATAGCGCCAAATTTAGTAAGGAAATTGTAGATAGAACCCAAGAATTAAGTTGGTTGAAAGACAATGATCTTCAAGGACTAGGGCTAAATGAGTTGCAGCAACTTGAGAAAACAATTGAAATAGGACTCGATCGCGTGACTGAGATAAAGGAAAAGCAAATAATGAGTCAGATTTCTGAACTTCAGAAAAAGGGGAATCTGTTGGAAGAAGAGAACAAACATTTAAAGAAAAAGTTAGTGGAGACAGAGATGGAGGCTATGCTGTGTGAGCCAGAAATTCCTTTCATGGTGGACTTAGATAAAAGAATAATGCAGGAAGAAGGTGTCTCACTAGATTCTACAAATAACATTAGCAGTTGCATCAATGATCCTCCTCCCGAGGACGGTTCCTCAGACATATCTCTTACGTTAGGGCTACCCTTCTCTAACTGA 705 0.4085 MTRAKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGLIVFSSTGKLFDYSNASINDIITIYNTHSHGVNKLGKPSLELQLEAGNSAKFSKEIVDRTQELSWLKDNDLQGLGLNELQQLEKTIEIGLDRVTEIKEKQIMSQISELQKKGNLLEEENKHLKKKLVETEMEAMLCEPEIPFMVDLDKRIMQEEGVSLDSTNNISSCINDPPPEDGSSDISLTLGLPFSN* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0800 234 Coils Coil 123 176 - -
Gso4g0800 234 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 228 - -
Gso4g0800 234 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso4g0800 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
Gso4g0800 234 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Gso4g0800 234 MobiDBLite consensus disorder prediction 204 226 - -
Gso4g0800 234 Pfam K-box region 94 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso4g0800 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso4g0800 234 CDD MADS_MEF2_like 12 75 IPR033896 GO:0000977|GO:0045944
Gso4g0800 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso4g0800 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso4g0800 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso4g0800 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso4g0800 234 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Gso4g0800 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso4g0800 234 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0800 Gso-Chr4 8271618 8279397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0800 1 232 MADS-box Gene Family AT2G22540 50.628 5.59e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso4g0800 K-box 7.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0800 - - gmx:100801525 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0800 4 8271618 8279397 Gso6g0803 6 7606892 7612826 GST