Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0794 ATGGAATTTGACGAGCACGAGGACCAAGAGGAAGAGGAGGAAGAGGAAATGGGATTCTCAGTGGCGGCTGCGAGTTACGACTCGCTGGGAAACGCGGCGGTGAGGTCTAAAATGAGCGGCGGCGAGGGAGTTGCGGTCACCGGGAATTCTGGTCGGAAAGGGACGCTGAGATACAGAGAATGTCAGAAGAACCACGCCGTCAGCATTGGAGGCCAAGCCGTCGACGGCTGCTGCGAGTTTTTGGCCGCCGGGGAGGAAGGTACGCTGGAGGCCGTAATTTGCGCCGCCTGCAACTGCCACCGCAATTTCCACCGCAAGGAGATCGACGGCGAAACCAGCCCTTACCGGCAGCGTTCGCAGCCGCAGCCTCAGCCTCTGCACCCTCAGTACCACCACCAATTCTCCCCTTACTACCACCGCGCCCCACCACCTTCGGCTGCCGGGTACCTCCACCACCACCTGGTAACTCCTCCGGTGTCGCAGCACCGGCCCTTGGCTCTGCCACCGTTAGCTTCCGGAGGAGTGTTCAGTAGGGAGGAAGAAGACATGTCAAACCCCAGTTCCAGCGGCGGCGGTGGCGGTTTTAGTGGTGGTGGAGGTGGTAGCGGGAGTGGAACGAAGAAGAGGTTTAGGACGAAGTTCACGCAGGAGCAGAAGGATAAGATGCTTGCATTTGCGGAGGAGCTAGGGTGGAGAATTCAGAAGCATGACGAAGTTGCTGTGGAACAATTCTGCGCTGAAACTTGCGTCAAGAGACATGTGCTCAAGGTTTGGATGCACAATAACAAACACACTCTTGCTAATTCTGAGCAACGTTCAGCTGGGAATGGATCGAACCACTTGAACAGCACAACAATAATTGAGAATTCTCAATTATCCTAA 882 0.5601 MEFDEHEDQEEEEEEEMGFSVAAASYDSLGNAAVRSKMSGGEGVAVTGNSGRKGTLRYRECQKNHAVSIGGQAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGETSPYRQRSQPQPQPLHPQYHHQFSPYYHRAPPPSAAGYLHHHLVTPPVSQHRPLALPPLASGGVFSREEEDMSNPSSSGGGGGFSGGGGGSGSGTKKRFRTKFTQEQKDKMLAFAEELGWRIQKHDEVAVEQFCAETCVKRHVLKVWMHNNKHTLANSEQRSAGNGSNHLNSTTIIENSQLS* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0794 293 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 33 267 - -
Gso4g0794 293 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 107 IPR006456 -
Gso4g0794 293 MobiDBLite consensus disorder prediction 160 208 - -
Gso4g0794 293 MobiDBLite consensus disorder prediction 114 129 - -
Gso4g0794 293 Pfam ZF-HD protein dimerisation region 56 108 IPR006456 -
Gso4g0794 293 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 33 267 - -
Gso4g0794 293 MobiDBLite consensus disorder prediction 110 142 - -
Gso4g0794 293 MobiDBLite consensus disorder prediction 1 18 - -
Gso4g0794 293 MobiDBLite consensus disorder prediction 267 293 - -
Gso4g0794 293 SUPERFAMILY Homeodomain-like 195 265 IPR009057 -
Gso4g0794 293 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 57 108 IPR006456 -
Gso4g0794 293 Gene3D - 193 270 - -
Gso4g0794 293 MobiDBLite consensus disorder prediction 1 22 - -
Gso4g0794 293 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 207 263 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0794 Gso-Chr4 8193056 8194871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0794 9 266 ZF-HD Transcription Factor Family AT4G24660 49.807 3.11e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso4g0794 ZF-HD_dimer 1.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0794 - - gmx:100794438 526.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0794 4 8193056 8194871 Gso4g0794 4 8193056 8194871 ECH
Gso4g0794 4 8193056 8194871 Gso6g0799 6 7560235 7561439 GST
Gso14g1515 14 46556961 46558272 Gso4g0794 4 8193056 8194871 PCT
Gso2g1805 2 41848502 41850651 Gso4g0794 4 8193056 8194871 PCT
Gso4g0794 4 8193056 8194871 Gso14g1515 14 46556961 46558272 PCT
Gso4g0794 4 8193056 8194871 Gso2g1805 2 41848502 41850651 PCT