Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0793 ATGGGTTTTGGCGCCCCATGTGTTCCCTCACCCATCCCAATTCTCATGGGCTACCTCTCTTGCAATGCCCACTCCTCAATCGCCACCTGCCACCCCCACCACAAACCCCTCGCCGCAACACCAATCCGACACTTTCCCTACGCCGACATCGTCGCCGCCGCCAACGGCTTCTCCTCCGACACCTTCCTGGGCCGAGGCAGCCACGGCAGAGTCTACAGAGCCACCCTGGACGCCGGCAAGCTCCTCGCCGCCGTCAAAACGACCAAACTTGTCGCCACCAGCACCTCTAAAAACCACGCCACCAAATGCACCGGCTGCGGCAACTGCACCAGCCCCGCCGAAAACGAGATCGAGATCCTCTCCCAAATCCCCAGCCCCCGCCTCGTCAACCTCATCGGCTTCAGCACCGACCCAAACGGCAACAAATTACTCGTCGTCGAATACATGCCCAACGGCTCGCTCCACGATCTGTTACACTCCGTTAAAAAACCGCCCGGTTGGAACCGTAGGGTCCGGTTCGCGCTTCAGGTCGCAAAAGCGGTTCGCGAACTACACTCTTCCAACCCTCCCGTTATTCACCGTGACGTTAAGTCTTCCAATGTTTTAATCGATCAAGAATGGAACGCCAGGCTCGGTGACTTCGGCTTGGCCTTAAGGGGACACGTGGAGGACGTTCGCGTCAAGTGCACTCCCCCCGCGGGGACCTTAGGGTACCTCGACCCGTGCTACCTTGCGCCGGAGGATCTTAGTGCTAAGAGCGACGTCTTCAGCTTCGGAATCTTGCTCTTGGAAATAATCAGTGGAAGAAACGCTATTGATGTTAACTTTAGCCCTCCGTCTGTGGTGGACTGGGCGGTGCCGTTGATTAAGATCGGCGACTTTGCCGGAATCTGCGACCGCCGAATCGGCCCTCCGCCGGACCCTGCCGTGGTGCGGCAGCTCGCAGTGCTGGCCGCCAGATGCGTGAGGTCGACGGCGGAGAAGCGGCCGTCGATGGCGGAGGTGGTGGAGTGTCTTAATCTGGCGAGGAAGAGGATCCGCGCGTCACCGATTTGGAACAGTCTGCGGCGGCGCGTGGCACGCGTCGAGAGCGCGCTTCCGGTGTTTGACGGCAATGATTGTGATGGGAGTGAGGAATTTGTGAGGATGGTGAATAAAGGTGGGAGTGGGAGTAAGAGGAACGGGAAAGTATCGAGTGTGTCGCGTGTAGGGTATGGGAGTGAGGCCTCCAATAATAATAAAGTGATGAGGTCAAAGTCCATTGGTTCTGGTTCGTTGAAAGGGAGTTGGGTCAAAATGCAACCGCACCAAACGGAGAATGAAGGGTTTGGGAGAAGGAAGGTGAAGCTAAAAAGGTCAAAGTCTATGGGGGTTTTGCAAGGTTCGCTACTGATACATTATGGCAGCGAGAATGATGTAGTAATTCGTTCGGGAATGGCCAAGTTGGTTGTTAAGGATAAGTTGGAAAAACCGTTAGTGAAATCGCGTTGA 1491 0.562 MGFGAPCVPSPIPILMGYLSCNAHSSIATCHPHHKPLAATPIRHFPYADIVAAANGFSSDTFLGRGSHGRVYRATLDAGKLLAAVKTTKLVATSTSKNHATKCTGCGNCTSPAENEIEILSQIPSPRLVNLIGFSTDPNGNKLLVVEYMPNGSLHDLLHSVKKPPGWNRRVRFALQVAKAVRELHSSNPPVIHRDVKSSNVLIDQEWNARLGDFGLALRGHVEDVRVKCTPPAGTLGYLDPCYLAPEDLSAKSDVFSFGILLLEIISGRNAIDVNFSPPSVVDWAVPLIKIGDFAGICDRRIGPPPDPAVVRQLAVLAARCVRSTAEKRPSMAEVVECLNLARKRIRASPIWNSLRRRVARVESALPVFDGNDCDGSEEFVRMVNKGGSGSKRNGKVSSVSRVGYGSEASNNNKVMRSKSIGSGSLKGSWVKMQPHQTENEGFGRRKVKLKRSKSMGVLQGSLLIHYGSENDVVIRSGMAKLVVKDKLEKPLVKSR* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0793 496 Pfam Protein tyrosine and serine/threonine kinase 61 339 IPR001245 GO:0004672|GO:0006468
Gso4g0793 496 SMART serkin_6 57 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0793 496 PANTHER OS01G0750732 PROTEIN 15 490 - -
Gso4g0793 496 Gene3D Phosphorylase Kinase; domain 1 20 148 - -
Gso4g0793 496 Gene3D Transferase(Phosphotransferase) domain 1 149 354 - -
Gso4g0793 496 PANTHER - 15 490 - -
Gso4g0793 496 SUPERFAMILY Protein kinase-like (PK-like) 36 339 IPR011009 -
Gso4g0793 496 ProSiteProfiles Protein kinase domain profile. 57 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0793 496 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524
Gso4g0793 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0793 Gso-Chr4 8182291 8184206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0793 43 350 Receptor kinase-like Gene Family AT3G59420 39.297 4.17e-66 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gso4g0793 PK_Tyr_Ser-Thr 1.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0793 - - gmx:100799382 973.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0793 4 8182291 8184206 Gso4g0793 4 8182291 8184206 ECH
Gso4g0793 4 8182291 8184206 Gso6g0798 6 7548254 7550231 GST
Gso2g1806 2 41867327 41869104 Gso4g0793 4 8182291 8184206 PCT
Gso4g0793 4 8182291 8184206 Gso2g1806 2 41867327 41869104 PCT