Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0789 ATGGCACCCAGTTTTGACTTTGCTTCTAGCCTCCTTTGCACAGAGGACAGCGCCGTTTTCGACGAGAGCCATAATAACGGGGGTACGATGATGTCGATGATGGGGGTGTACGAGGACACGTGGAGTCCTAGGAAGCGCCACTTTGATGAAGAGCCAGATGAGTTGCCATTGCTGAGTGATGAAAGCTTGGCGATGATGGTGGAAAAAGAGTGCCAACACTGGCCTGGTTTGCGTTGCTTGAATAAGCTTCAAACTGGGGATTTGGACTTCGGTGCCAGAATGGAGGCCGTTGATTGGATTCTCAAGGTCCGATCGCATTTTGGATTTGGTCCTCTCTGTGGATATCTATCTATAAATTACTTGGACCGATTCCTTTGTGCATATGAATTACCAAAGGGAAGAGTTTGGACAATGCAATTATTGGCTGTGGCGTGTTTATCTCTAGCAGCCAAATTAGATGAGACAGAAGTTCCAATCTCTCTTGATTTGCAGGTGGGTGAATCGAAGTTTTTATTTGAGGCTAAAACCATACAGAGAATGGAGCTTCTTGTACTAAGCACATTGAAGTGGAGAATGCAAGCAATTACTCCTTTCACATTCCTTGATTATTTCCTTTGTAAGATCAATGATGATCAAAGTCCATTAAGGTCTTCAATTATGCGATCCATCCAACTCATATCGAGCACTGCAAGAGGGATTGACTTCTTGGAATTCAAACCATCAGAGATTGCAGCAGCAGTGGCTATGTATGTCATGGGGGAAACCCAAACAGTTGACGCTGGGAAAGCAACTTCTTTTCTGATTCAACACGTAGAAAAGGAGAGACTATTGAAGTGTGTCAAAATGATCCAAGAGTTGTCATGCAACAGTGGCTCTGCCAAGGATTCAAGCGCTTCTGTGACTTGCTTACCCCAAAGTCCAATAGGTGTGTTGGATGCTTTGTGCTTCAGCTACAAAAGTGATGACACAAATGCTGGTTCATCTGTTAATTCTTCACACAATAGCCCTGTTGCCAAAAGGAGGAAGTTAAACAAAACCTGTGGAGCTGACCTGTTGTAG 1059 0.4419 MAPSFDFASSLLCTEDSAVFDESHNNGGTMMSMMGVYEDTWSPRKRHFDEEPDELPLLSDESLAMMVEKECQHWPGLRCLNKLQTGDLDFGARMEAVDWILKVRSHFGFGPLCGYLSINYLDRFLCAYELPKGRVWTMQLLAVACLSLAAKLDETEVPISLDLQVGESKFLFEAKTIQRMELLVLSTLKWRMQAITPFTFLDYFLCKINDDQSPLRSSIMRSIQLISSTARGIDFLEFKPSEIAAAVAMYVMGETQTVDAGKATSFLIQHVEKERLLKCVKMIQELSCNSGSAKDSSASVTCLPQSPIGVLDALCFSYKSDDTNAGSSVNSSHNSPVAKRRKLNKTCGADLL* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0789 352 PANTHER CYCLINS 1 345 IPR039361 -
Gso4g0789 352 Pfam Cyclin, C-terminal domain 195 294 IPR004367 -
Gso4g0789 352 SUPERFAMILY Cyclin-like 54 192 IPR036915 -
Gso4g0789 352 SMART cyclin_7 98 186 IPR013763 -
Gso4g0789 352 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 345 - -
Gso4g0789 352 CDD CYCLIN 93 185 IPR013763 -
Gso4g0789 352 Pfam Cyclin, N-terminal domain 63 192 IPR006671 -
Gso4g0789 352 Gene3D - 76 193 - -
Gso4g0789 352 SMART Cyclin_C_2 195 306 IPR004367 -
Gso4g0789 352 Gene3D - 63 282 - -
Gso4g0789 352 SUPERFAMILY Cyclin-like 177 286 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0789 Gso-Chr4 8106332 8109056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0789 60 327 Core Cell Cycle Gene Families AT2G22490 47.101 1.05e-78 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0789 K18810 - gmx:100792867 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0789 4 8106332 8109056 Gso4g0789 4 8106332 8109056 ECH
Gso4g0789 4 8106332 8109056 Gso6g0795 6 7499944 7502901 GST