Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0779 ATGAAAGGAGAATACGTAGAGCAACAGCAACAACATCCTAAGAGTGAAACACCACCTAGTATGTTCTCAAAGCTTCAGCCTCAGCACCATCCTTTCCCGCACCACCCTTTCCAACTCTCCGCCGAGGATGCCACCACCATCACCCCGAGCACCGCTCAGAAGGCCAACTCCTCCGGCGGCGACGGCGCGACCATCGAGGTTGTTCGGCGTCCCAGGGGACGTCCGCCCGGGTCCAAAAACAAGCCCAAGCCACCGGTTATCATAACCCGTGACCCGGAACCCGCTATGAGTCCCTACATTTTAGAAGTGTCTGGCGGAAACGACGTCGTCGAGGCCATCGCGCAGTTCAGTCACCGCAAGAACATGGGAATCTGCGTCCTCACGGGTTCTGGAACCGTCGCTAACGTCACGCTCCGTCAACCTTCCACCACGCCCGGCACAACCGTTACTTTTCACGGCCGTTTCGACATCCTTTCTGTTTCCGCCACCTTCCTTCCGCAGCAGTCGGGCGCTTCTCCGGCGGTTCCCAACGGCTTCGCCATCTCGCTCGCCGGACCGCAGGGGCAGATCGTCGGAGGACTTGTTGCCGGCGGGCTGATGGCTGCCGGGACTGTTTTTGTGATCGCTGCCTCGTTCAACAACCCGGCGTACCACAGGCTTCCGCCGGAGGAAGAGGGCGCCTCCGCCGGAGATGGACATTCGCCGCCAGTCTCCGGCGGCGGAGACAGCGGGCATGGACAGGCGGAGTCGTGTGGAATGTCCATGTACAGCTGTCACTTGCCCTCTGATGTGATTTGGGCTCCAACGGCTAGACCACCGCCGCCGCCGCCGCCGCCTTACTGA 843 0.6109 MKGEYVEQQQQHPKSETPPSMFSKLQPQHHPFPHHPFQLSAEDATTITPSTAQKANSSGGDGATIEVVRRPRGRPPGSKNKPKPPVIITRDPEPAMSPYILEVSGGNDVVEAIAQFSHRKNMGICVLTGSGTVANVTLRQPSTTPGTTVTFHGRFDILSVSATFLPQQSGASPAVPNGFAISLAGPQGQIVGGLVAGGLMAAGTVFVIAASFNNPAYHRLPPEEEGASAGDGHSPPVSGGGDSGHGQAESCGMSMYSCHLPSDVIWAPTARPPPPPPPPY* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0779 280 PIRSF ESCAROLA 6 266 IPR014476 GO:0003680
Gso4g0779 280 MobiDBLite consensus disorder prediction 41 60 - -
Gso4g0779 280 Pfam Plants and Prokaryotes Conserved (PCC) domain 98 214 IPR005175 -
Gso4g0779 280 MobiDBLite consensus disorder prediction 219 252 - -
Gso4g0779 280 Gene3D - 97 232 - -
Gso4g0779 280 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 8 277 - -
Gso4g0779 280 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 227 - -
Gso4g0779 280 MobiDBLite consensus disorder prediction 1 92 - -
Gso4g0779 280 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 8 277 IPR014476 GO:0003680
Gso4g0779 280 MobiDBLite consensus disorder prediction 10 24 - -
Gso4g0779 280 CDD DUF296 98 212 IPR005175 -
Gso4g0779 280 ProSiteProfiles PPC domain profile profile. 93 233 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0779 Gso-Chr4 7976852 7978156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0779 1 275 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 59.722 1.73e-104 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0779 - - gmx:100788098 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0779 4 7976852 7978156 Gso4g0779 4 7976852 7978156 ECH
Gso4g0779 4 7976852 7978156 Gso6g0785 6 7400770 7402107 GST