Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0777 ATGCTCATGCCACCTTCTTCCTTCACCCTCCTCCTCACTCTCCTTCTATTATTCCTTACATATGAAGCAGAGAGCGGAGAAACTCCACCCCCTACTCCCCCGCCGCCGTTCAGACCAGGCATAGCGGTGCTGGTGTGCGTTTTGACAACCATAATCTCCCTTACATCGCTCCTCCTCCTCTACATCAAACACTGCAACGGCGGCATCCCAGACGGCGGAGGCGGAAACTCGGCTCCGTGGACGGTGGCGCCCTTCTCCGGAAGGAAAAACTCCGGCATTGACCGGTCCGTGGTGGAATCCTTGCCGGTCTTCAGATTCGGAGCGCTGCGGGGGCAAAAGGAAGGACTCGATTGCGCGGTGTGCCTGAACAAGTTCGAGGCCGCGGAGGTTCTCCGGCTGTTGCCGAAATGCAAGCACGCGTTCCACGTGGAGTGCGTGGACACGTGGCTGGACGCGCATTCCACGTGTCCTCTCTGCCGCTACCGCGTGGATCCGGAGGACATTCTCCTGGTGGAGGACGCAAAGCCTTTCCGCCAGAGTCATCAACAACAACGGAACAAGGAAGAGGAACGCGTGCGTTTGAATTTGGACCTGGAGAAGCAGGAGATAGTGGAGTCTCGACGGAGGCATTCGTCCGTTGGGGTGGGGGAAGGAGAAACAACGGAGGAGCAGCAGCAGAGTCGGAGGTGGACGACGTCGTTTAGAAGGTCATTGGATAGCATTAGCGCCACATCGAGAAAGAAGAACGAGAGCGTTGGGGTTGGTTGTTTTGTGCGTCCCAGAAAAGACGGGATGTTGTTGACGCAAGAGACGGAGAGGGCAAGCGTGGAACGGAGGTTGGAGCACCGGATTATTGTCTCCCCGGGCCAGGGCCCGGGCCCAGGCCCGGGCCCAGGTCCGTGTGGGCTCGAGCAGCGGTGGAGCGACTTGCAGGCTTCGGACCTGCTGTATCTGACGTCGGAGATGATAATGATGAGGGACAGTTGGAATGGCAGAGGGAGTGGTGTCTGA 1011 0.5856 MLMPPSSFTLLLTLLLLFLTYEAESGETPPPTPPPPFRPGIAVLVCVLTTIISLTSLLLLYIKHCNGGIPDGGGGNSAPWTVAPFSGRKNSGIDRSVVESLPVFRFGALRGQKEGLDCAVCLNKFEAAEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVEDAKPFRQSHQQQRNKEEERVRLNLDLEKQEIVESRRRHSSVGVGEGETTEEQQQSRRWTTSFRRSLDSISATSRKKNESVGVGCFVRPRKDGMLLTQETERASVERRLEHRIIVSPGQGPGPGPGPGPCGLEQRWSDLQASDLLYLTSEMIMMRDSWNGRGSGV* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0777 336 MobiDBLite consensus disorder prediction 207 233 - -
Gso4g0777 336 PANTHER RING-H2 FINGER PROTEIN ATL43 30 326 - -
Gso4g0777 336 MobiDBLite consensus disorder prediction 217 233 - -
Gso4g0777 336 CDD RING-H2_EL5_like 117 160 - -
Gso4g0777 336 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Gso4g0777 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 167 IPR013083 -
Gso4g0777 336 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 30 326 - -
Gso4g0777 336 SMART ring_2 118 159 IPR001841 -
Gso4g0777 336 Pfam Ring finger domain 117 160 IPR001841 -
Gso4g0777 336 SUPERFAMILY RING/U-box 112 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0777 Gso-Chr4 7958847 7960312 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0777 39 332 C3H Transcription Factor Family AT5G05810 49.538 4.77e-75 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0777 K19041 - gmx:100794083 593.964