Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0776 ATGCAGATCTCATTCATCAAAATAAAGAAAAAGAGTGATGCAGATAAATCGAAAAGGACAAGGAATTCGGAAGCAACGTTTGTCATCAAGCAAAGTCCAAAGCGCGCAAATCCTATGCAGAAGACCATGGACTTCAGTATTCGCTTCCTGTTCTTGATGCTGCAATTCCTCATAGTTCTGGGTTGTGCTACTAAACCAGGGGTACGATTGGATATTCAAGATAAACATGTGATAATGGATAATGGCATAGTCCAAGTTAACTTATCAAACCCTGAAGGAATTGTCACGGGAATTCAATATAATGGCATCGACAATTTGCTCGAAGTTCTTAACGACGAATCTAACAGAGGGTACTGGGATATTGTATGGGATGAAGGCGGAAAAAAAAGAACAAAAAAAGGAGCAAAGGGAAAGGGTAGATTTGACAGAATGGAAGCCACGAATTTTACGGTGATAGTGGAAAGTGAGGAACAAGTAGAGCTATCTTTCTCCAGAACATGGAATGACTCTCTTGAGGGGAAGCTTCCACCACTCAATATTGATAAAAGGTTTATAATGCTTAGTGGTTCATCTGGATTTTACACCTATGCCATTTACGAGCATTTGAAGGAATGGCCAGCTTTCGATCTTGACAATACTAGGATCGCATTCAAGCCTAGGAAAGACAAGTTCCACTACATGGTTGTGGCGGACAACAGACAAAGATTTATGCCTCTGCCTGATGACCGCTCACCCCCAAGAGGTCAAGTTCTAGCTTACCCAGAGGCTGTGCGCCTTGTTGACCCCCTCGAGCCTGAATTCAAAGGAGAGGTAGATGACAAATATCAGTACGCGTGTGAGAGCCGATACAACCGTGTTCACGGTTGGATATGCATTGATCCATTGAATTCCACTGGATTCTGGCTAATTACGCCAAGCTATGAGTTCCGATCTGCTGGGCCCCTCAAGCAATATCTTACTTCTCACGTTGGCCCCACCACACTCTCTGTATTTCATAGCACGCATTATTCAGGGGCGGATCTGATCATGCAATTTGGGCCCAATGAGCCGTGGAAAAAAGTCTATGGGCCCATATTTATATACCTTAATTCTCTATCTAACGGGTTTAGCCCTATCGGCCTATGGGAGGACGCCAAACAACAGATGGTCAATGAAGTTGAAAGCTGGCCCTATACATTTCCAGCTTCTGAGGACTTTCTCTCATCTGACCAGCGAGGTAAAGTTGAAGGTAGATTGCTTGTCCGAGACAGGTACATCAGTGATGCATTCGTCCCAGTCAGCGGTGCTTATGTGGGACTAGCAGCCATAGGAGAGGTTGGATCTTGGCAGAGAGAATGTAAGGGTTATCAATTTTGGACCATTACTGATGATAAAGGCTATTTCTCAATTATTAACATACGCCCTGGAGGCTATAACCTCTACTCGTGGGTCAATGGATTCATTGGTGATTATCAATTCGATAGCGTCATCTACGTAACTTCAGGTTGTGAAACTAATGTGGGTGAGCTTGTTTATGAGGCACCAAGAGATGGCCCTACGTTGTGGGAAATAGGCATCCCTGATCGTTCAGCTGCTGAGTTCTATGTTCCTGACCCAAACCCCATGTGCATTAACAGACTCTATGTCAACCATCCAGACAGGTTTAGGCAATATGGCTTGTGGGAGAGATATGCTGAGTTGTATCCAAATGAAGACCTAGTTTACACTGTTGGCATTAGTGACTACAGAAAGGATTGGTTCTTTGCTCAGGTTAACAGGAAGAAAGACAATGGCACTTACATAGGAACCACATGGCAAATTAATTTCAAGCTTGATAGTGTGAATACCAACGGAACCTACACATTGCAAGTGGCTCTGGCATCTGTGCATTCTGCTGAATTAGAGATTCGGATAAACAATTTAGAAGCAAATCCACCTTTATTTTCAAGTGGAGTGATTGGAAAAGAGAATACTATAGCTAGACATGGAATTCACGGTCTCTACTGGCTATTCAGCATTCATATACAAGGCACACTTCTTGTGCAGGGAAACAATACCATCTTTCTAACACAAACAAGAGACACTAGTCCTTTTATAGGAATTATGTATGACTATATTCGTCTAGAATACAAACGGTGA 2118 0.4297 MQISFIKIKKKSDADKSKRTRNSEATFVIKQSPKRANPMQKTMDFSIRFLFLMLQFLIVLGCATKPGVRLDIQDKHVIMDNGIVQVNLSNPEGIVTGIQYNGIDNLLEVLNDESNRGYWDIVWDEGGKKRTKKGAKGKGRFDRMEATNFTVIVESEEQVELSFSRTWNDSLEGKLPPLNIDKRFIMLSGSSGFYTYAIYEHLKEWPAFDLDNTRIAFKPRKDKFHYMVVADNRQRFMPLPDDRSPPRGQVLAYPEAVRLVDPLEPEFKGEVDDKYQYACESRYNRVHGWICIDPLNSTGFWLITPSYEFRSAGPLKQYLTSHVGPTTLSVFHSTHYSGADLIMQFGPNEPWKKVYGPIFIYLNSLSNGFSPIGLWEDAKQQMVNEVESWPYTFPASEDFLSSDQRGKVEGRLLVRDRYISDAFVPVSGAYVGLAAIGEVGSWQRECKGYQFWTITDDKGYFSIINIRPGGYNLYSWVNGFIGDYQFDSVIYVTSGCETNVGELVYEAPRDGPTLWEIGIPDRSAAEFYVPDPNPMCINRLYVNHPDRFRQYGLWERYAELYPNEDLVYTVGISDYRKDWFFAQVNRKKDNGTYIGTTWQINFKLDSVNTNGTYTLQVALASVHSAELEIRINNLEANPPLFSSGVIGKENTIARHGIHGLYWLFSIHIQGTLLVQGNNTIFLTQTRDTSPFIGIMYDYIRLEYKR* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0776 705 CDD RGL4_M 404 503 IPR029413 -
Gso4g0776 705 CDD RGL4_N 73 364 - -
Gso4g0776 705 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 705 - -
Gso4g0776 705 Pfam Polysaccharide lyase family 4, domain II 427 499 IPR029413 -
Gso4g0776 705 Pfam Polysaccharide lyase family 4, domain III 513 701 IPR029411 -
Gso4g0776 705 SUPERFAMILY Galactose-binding domain-like 510 703 IPR008979 -
Gso4g0776 705 Gene3D - 511 702 - -
Gso4g0776 705 CDD RGL4_C 515 702 - -
Gso4g0776 705 Gene3D - 401 501 - -
Gso4g0776 705 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 1 705 - -
Gso4g0776 705 Pfam Rhamnogalacturonate lyase family 67 271 IPR010325 -
Gso4g0776 705 SUPERFAMILY Starch-binding domain-like 403 501 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0776 Gso-Chr4 7951469 7956816 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0776 68 702 Polysaccharide Lyase AT1G09890 65.517 0.0 870
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0776 K18195 - gmx:100786488 1441.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0776 4 7951469 7956816 Gso6g0782 6 7367736 7372651 GST