Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0775 ATGCCGTCACTGGGGGTGCAACTTACTATTCAAGATAATCATGTGGTGATGGAGAATGGCATGCTAAAAGTCACCTTATCAAATCCTGAGGGAATTGTGACTGGAATACAGTATAATGACATAGACAACTTGCTTGAAGTTTTGAATGACGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCAACAAGTACAGGAACAAGTGGCACATTTGATGTCATCAAGGGAACAACTTTCAAAGTTATGGTTGAAAATGAGGACCAAGTTGAGTTATCCTTCACCAGGACGTGGGACGTTTCTCTCGAGGGCAAGTTGGTTCCTTTAAATATTGATAAAAGGTTCGTAATGCTTCGTGGTTCTTCCGGCTTCTACTCCTATGCAATTTATGAGCACTTGGAGGACTGGCCAGCTTTCAATCTTGACGAAACAAGAATTGCTTTCAAGCTTAGAAAAGACAAGTTCCATTATATGGCGATGGCAGATAATAGACAAAGAAACATGCCTCTACCAGATGACCGATTACCACCTAAGGGCAAAGCCCTTGCCTACCCAGAGGCAGTTCTACTAGTCAATCCCATCGAACCAGAACTTAAAGGAGAGGTGGATGACAAGTACCAATATTCATGCGACAACAAAGATAGCCAAGTTCATGGATGGATCTGCATGGATCCCGCAGTCGGATTCTGGCTAATTACGCCCAGCAATGAGTTTAGATCTGGTGGACCCCTCAAACAAAACTTAACTTCCCATGTGGGGCCTACCACTCTTGCTGTGTTTCTGAGTGCCCATTATAGCGGAGAGGATCTGGTGCCCAAGTTCTATGCTGGTGAGGCATGGAAGAAAGTTTTTGGTCCTGTTTTCATTTATTTGAATTCTCCCTATGATGGAAGTGACCCCCTTAAGCTATGGGAAGACGCTAAACTACAGATGTTGGTGGAAGTTCAAAGCTGGCCTTACAGTTTTCCTGAATCAGAGAATTTCGCCAAGTGGGACGAGCGTGGTAATGTTAGTGGCAGGCTTTTGGTTAGAGAGAGGTATATAAACGATGACTATGTATCAGCAAAAGGTGCCTATGTTGGCTTGGCTCCACCGGGAGACGTGGGGTCTTGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCTAAAGCAGACGATGATGGCTACTTCTCCATCAGCAATATACGTGCAGGAGACTATAATGTGTTCGCATGGGTACCTGGTTTTATTGGTGACTACAAATATGACATAGTTATGAAGATAACAGAAGGTTGTGACATCGACCTTGGTGATCTTGTATATGAACCTCCAAGAGATGGTCCAACATTGTGGGAAATTGGCATCCCTGATCGCTCAGCTGCTGAATTCTATGTTCCTGACCCAAATCCCAAATATATCAACAAACTCTATTTTAACCATCCTGACAAGTTTAGGCAATATGGGTTGTGGGAGAGATATGCAGAATTATACCCAGACAAAGACTTGATCTACACAGTTGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGACAACACATATCAAGGAACCACATGGCAAATCAAGTTTAAGCTTGATAACGTGAACAAAAGCAGTAGCTATAAACTGAGAGTTGCTTTGGCATCAGCAGCATTATCTGAACTTCAGGTTCGAGTTAATAATCCAAAGGCACCTCGTCCTCTATTTTCAAGTGGGTTGATTGGAAGGGATAACTCAATCGCTAGGCACGGGATTCATGGACTTTATTGGCTTTACAATGTAGACATGCCGGGAACTCAACTAGTTGAAGGAGATAATACCATCTTTTTGACACAGACCAGAGGCAATGGTCCATTTCAGGCCATTATGTATGATTATATTCGTTTGGAAGGTCCTCCATCGTCTAGCTTCAATAAGAAAAATTGA 1932 0.4281 MPSLGVQLTIQDNHVVMENGMLKVTLSNPEGIVTGIQYNDIDNLLEVLNDESNRGYWDLVWSSPTSTGTSGTFDVIKGTTFKVMVENEDQVELSFTRTWDVSLEGKLVPLNIDKRFVMLRGSSGFYSYAIYEHLEDWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRLPPKGKALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWICMDPAVGFWLITPSNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFYAGEAWKKVFGPVFIYLNSPYDGSDPLKLWEDAKLQMLVEVQSWPYSFPESENFAKWDERGNVSGRLLVRERYINDDYVSAKGAYVGLAPPGDVGSWQRECKNYQFWAKADDDGYFSISNIRAGDYNVFAWVPGFIGDYKYDIVMKITEGCDIDLGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYFNHPDKFRQYGLWERYAELYPDKDLIYTVGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFKLDNVNKSSSYKLRVALASAALSELQVRVNNPKAPRPLFSSGLIGRDNSIARHGIHGLYWLYNVDMPGTQLVEGDNTIFLTQTRGNGPFQAIMYDYIRLEGPPSSSFNKKN* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0775 643 SUPERFAMILY Galactose-binding domain-like 440 632 IPR008979 -
Gso4g0775 643 Pfam Polysaccharide lyase family 4, domain II 357 429 IPR029413 -
Gso4g0775 643 Gene3D - 441 632 - -
Gso4g0775 643 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 637 - -
Gso4g0775 643 SUPERFAMILY Starch-binding domain-like 377 421 IPR013784 GO:0030246
Gso4g0775 643 CDD RGL4_C 445 632 - -
Gso4g0775 643 Gene3D - 333 420 - -
Gso4g0775 643 Pfam Polysaccharide lyase family 4, domain III 443 631 IPR029411 -
Gso4g0775 643 Gene3D - 5 300 IPR014718 GO:0030246
Gso4g0775 643 Pfam Rhamnogalacturonate lyase family 4 203 IPR010325 -
Gso4g0775 643 SUPERFAMILY Galactose mutarotase-like 8 294 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gso4g0775 643 CDD RGL4_N 8 304 - -
Gso4g0775 643 CDD RGL4_M 334 433 IPR029413 -
Gso4g0775 643 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0775 Gso-Chr4 7943905 7949029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0775 1 634 Polysaccharide Lyase AT1G09890 71.541 0.0 959
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0775 K18195 - gmx:100793563 1340.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0775 4 7943905 7949029 Gso4g0775 4 7943905 7949029 ECH
Gso4g0775 4 7943905 7949029 Gso6g0781 6 7359348 7366421 GST