Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0767 ATGTCTCCGCCAGTGCTAAGCATGGGGGAGGAGGAGGGTAAAAGCAATGTCACTTTGTTGGGTTCCTCATCAACCGCCATGGAAAGTGTGTGTCTCAAGAGCTTAGAATTTAAAGAACGCAACTACATGGGTTCATCTGATTGTTCTTCTGTGGACAGCTCGGTTCCGTCCTTCTCAGAAGAGTGTAAAAGTAATCTGAACCTGAAAGCCACTGAACTCAGGCTTGGGCTTCCGGGATCACAGTCTCCTGAAAGAGATTCTGATCTTTGCTTAAGAAGCTCAACTCAATTAGATGAAAAACCTTTGTTTCCGTTGCATCCTTTGACTGATGATCACCATTCTTCAGCCAAAATTGCTGTCTTGGGAAACAAAAGAGGGTTCTCTGATGCCATGAATGGCCTCTCCTCCGAGGGGAAATTCCTAGTTGATTTGGAGGCCGCCAATCCGATACTATCTCCCAGGCCTGCTTGTAACTTGGGATTAAAACCTGGTTCTACCCTTGATAAAGTTGGGGCTCAGCAAACCAAAATGAAAGAAGTAGCAACAACAAAGGGCAACGAAACTAGACCAAGTATTGATGGTTCTGCAAATAATAACAGTGCACCAGCTACCAAGGCTCAGGTTGTGGGGTGGCCTCCTATAAGATCATTCCGGAAAAATTCATTGGCAACTACTTCAAAGAACAATGAAGTAGTTGATGGAAAAAAGGGGGTTGGTGCACTGTTCGTCAAGGTCAGTATGGATGGTGCCCCCTATTTAAGGAAAGTAGACTTGAAGAATTACTCTACATATCCAGAATTATCTTCTGCTCTAGAAAAGATGTTCAGCTGTTTTACTATAAGTAAATGTGGATCTCATGGAATTCTGGGCAGGGAGATGCTGAATGAAACCAAGCTGAAGGACCTTCTTCATGGATCAGAATATGTTCTTACATATGAGGACAAAGATGGCGATTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTATTGAAACATGCAAGAGGCTGAGGATCATGAAGAGTTCTGATGCCATTGGTCTAGCTCCCAGGGCTGTTGAAAAAAGTAAGAGCAGGAACTAG 1083 0.4404 MSPPVLSMGEEEGKSNVTLLGSSSTAMESVCLKSLEFKERNYMGSSDCSSVDSSVPSFSEECKSNLNLKATELRLGLPGSQSPERDSDLCLRSSTQLDEKPLFPLHPLTDDHHSSAKIAVLGNKRGFSDAMNGLSSEGKFLVDLEAANPILSPRPACNLGLKPGSTLDKVGAQQTKMKEVATTKGNETRPSIDGSANNNSAPATKAQVVGWPPIRSFRKNSLATTSKNNEVVDGKKGVGALFVKVSMDGAPYLRKVDLKNYSTYPELSSALEKMFSCFTISKCGSHGILGREMLNETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCKRLRIMKSSDAIGLAPRAVEKSKSRN* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0767 360 MobiDBLite consensus disorder prediction 182 205 - -
Gso4g0767 360 Pfam AUX/IAA family 71 351 IPR033389 -
Gso4g0767 360 ProSiteProfiles PB1 domain profile. 240 342 IPR000270 GO:0005515
Gso4g0767 360 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 23 354 IPR003311 GO:0005634|GO:0006355
Gso4g0767 360 PANTHER AUXIN-INDUCED PROTEIN 23 354 - -
Gso4g0767 360 SUPERFAMILY CAD & PB1 domains 240 341 - -
Gso4g0767 360 Gene3D - 235 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0767 Gso-Chr4 7830189 7834988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0767 243 345 B3 DNA Binding Superfamily AT2G46530 33.981 6.75e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso4g0767 AUX_IAA 1.9e-91 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0767 K14484 - gmx:100783314 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0767 4 7830189 7834988 Gso4g0767 4 7830189 7834988 ECH
Gso4g0767 4 7830189 7834988 Gso6g0774 6 7266897 7271576 GST