Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0725 ATGATGACGGTGAGTTCAGCCTGCAAAGATGGGAGCAAGGTGGCACTGGACAACGGCAAGTACGTTAGGTACACACCTGAACAGGTTGAAGCACTGGAAAGACTCTACCATGAATGTCCCAAACCAAGTTCCCTCCGCCGCCAACAACTCATCAGAGAGTGTCCCATCCTCTCCAACATCGAACCCAAACAGATAAAGGTTTGGTTCCAAAACCGAAGGTGCAGAGAGAAGCAGCGGAAAGAAGCATCACGGCTGCAAGCTGTGAACAGGAAGCTAACAGCAATGAATAAATTACTGATGGAGGAAAACGACAGATTGCAGAAGCAGGTGTCACACCTCGTCTATGAAAACAGCTTTTTCCGCCAACAGACACACAACAACGCTACGCTTGCCACAACGGACACAAACACAAGCTGTGAGTCGGTGGTGACGAGTGGTCAGCGGAACTTGACACCGCAGCAGCATCCGCCGAGGGATGCTAGCCCTGCAGGACTTTTGTCCATCGCAGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTCGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCACGGTTGCCCTGGAGTGGCCGCACGTGCCTGCGGCCTTGTTGGTCTAGAACCTGCCAGGGTTGCCGAAATACTCAAAGATAGGCTCTCATGGTTTCGTGATTGCCGAACTGTGGATGTTCTAAATGTGATGTCCACTGGAAATGGTGGAACCATTGAGCTGCTTTACATGCAGTTGTATGCGCCAACAACTTTGGCACCTGGTCGTGACTTCTGGTTGCTGCGCTACACATCACTTTTAGAGGACGGTAGTCTTGTGGTCTGTGAAAGATCACTAAATAACACTCAGAATGGTCCTGCTATGCCCCCAGTGCAGCATTTTGTTAGAGCAGACATGCTGGCAAGCGGGTATCTGATAAGGCCTTGCGAAGGAGGGGGATCAATTATTCATATTGTTGATCATATGGTTCTAGAGCCATGGAGTGTACCTGAGGTTTTGCGCCCACTTTATGAGTCATCAATGCTGCTTGCTCAAAGGACAACTATGGCGGCCTTACGTCATTTGAGGCAGATTTCTCAAGAGGTTTCTCAGCCAAGTGTAACAGGATGGGGAAGAAGGCCTGCAGCTCTACGTGCGCTGAGCCAGAGATTGAGCAAGGGCTTTAATGAAGCTGTCAATGGGTTTGCAGATGATGGCTGGTCCATGTTAGAGAGTGATGGCATTGATGATGTTACCCTTCTTGTGAATTCCTCACCTAGCAAGATGATGGGAGTTAACCTTGGCTATAACAACAATGGATTTCCTTCTGTAAGCAGTTCTTTGCTATGTGCCAAAGCATCCATGTTGCTACAGAATGTCCCTCCAGCAATTCTTCTTAGATTCTTGCGGGAGCACCGATCAGAATGGGCAGATAGCAGTATTGATGCTTACTCAGCTGCTGCCATTAAAGCTGGTCCTTGTAGCTTGCCAGGGGCCCGACCCGGAGGTTTTGGGGGTCAGGTTATTCTTCCACTAGCCCACACAATTGAGCATGAAGAGTTCATGGAGGTTATCAAGCTTGAAAACATGGGCTATTATAGGGACGACATGAATATACCTGGTGATGTTTTCCTCTTGCAACTTTGCAGTGGAGTGGATGAGCATGCAGTTGGCACCAGCGCAGAACTTGTTTTTGCTCCAATCGATGCATCTTTCTCTGATGATGCGCCCATTTTACCTTCTGGTTTTCGCATCATACCTCTTGATTCTGGCACAGATGCTGCTAGTCCAAACCGTACACTTGATCTGGCTTCTGCACTTGAAGTTGGAACAACAGCAAACAAAGCAGCTGGTGACAACTCAGGTCATTCCGGGAGCACAAAGTCTGTGATGACAATAGCATTCCAGTTTGCGTTTGAAGTCCACCTTCAGGAGAACATAGCAACCATGGCCAGACAATATGTTCGTAGTATCATTGCATCTGTTCAAAGGGTTTCATTAGCACTTTCTCCTTCGCGCTTTGGTTCTCACAATGCTTTCCACTTACCACCTGGCACTCCTGAGGCACAAACACTTGCTCGATGGATCTGTAACAGCTACCGGTTCTATCTTGGGGTAGAACTTCTAAAATGTGAAGGCAGTGAATCCATTCTCAAGTCTCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAGGCATTACCCGTTTTCACGTTTGCAAATCAAGCTGGACTTGACATGCTTGAGACAACATTGGTTGCACTTCAAGACATCACTCTGGAAAAGATTTTTGATGACAATGGAAAGAAAACTCTGTGCACCGAGTTCCCCCAGATAATGCAGCAGGGTTTCATGTGTATTCAAGGTGGTATCTGTTTATCCAGCATGGGAAGGCCAGTATCCTATGAGAGAGCAGTTGCATGGAAAGTGTTAAACGAAGAAGAATCTGCTCATTGCATCTGTTTTATGTTCATCAATTGGTCCTTTGTCTGA 2535 0.475 MMTVSSACKDGSKVALDNGKYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSHLVYENSFFRQQTHNNATLATTDTNTSCESVVTSGQRNLTPQQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPARVAEILKDRLSWFRDCRTVDVLNVMSTGNGGTIELLYMQLYAPTTLAPGRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPAMPPVQHFVRADMLASGYLIRPCEGGGSIIHIVDHMVLEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSKGFNEAVNGFADDGWSMLESDGIDDVTLLVNSSPSKMMGVNLGYNNNGFPSVSSSLLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAIKAGPCSLPGARPGGFGGQVILPLAHTIEHEEFMEVIKLENMGYYRDDMNIPGDVFLLQLCSGVDEHAVGTSAELVFAPIDASFSDDAPILPSGFRIIPLDSGTDAASPNRTLDLASALEVGTTANKAAGDNSGHSGSTKSVMTIAFQFAFEVHLQENIATMARQYVRSIIASVQRVSLALSPSRFGSHNAFHLPPGTPEAQTLARWICNSYRFYLGVELLKCEGSESILKSLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLCTEFPQIMQQGFMCIQGGICLSSMGRPVSYERAVAWKVLNEEESAHCICFMFINWSFV* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0725 844 Gene3D - 12 86 - -
Gso4g0725 844 ProSiteProfiles 'Homeobox' domain profile. 15 79 IPR001356 GO:0003677
Gso4g0725 844 Coils Coil 75 109 - -
Gso4g0725 844 SMART START_1 167 377 IPR002913 GO:0008289
Gso4g0725 844 SUPERFAMILY Bet v1-like 167 378 - -
Gso4g0725 844 CDD START_ArGLABRA2_like 162 377 - -
Gso4g0725 844 CDD homeodomain 20 80 IPR001356 GO:0003677
Gso4g0725 844 SMART HOX_1 17 83 IPR001356 GO:0003677
Gso4g0725 844 PANTHER CLASS III HD-ZIP PROTEIN CNA1 5 844 - -
Gso4g0725 844 ProSiteProfiles START domain profile. 158 386 IPR002913 GO:0008289
Gso4g0725 844 Pfam START domain 168 376 IPR002913 GO:0008289
Gso4g0725 844 Gene3D - 202 383 IPR023393 -
Gso4g0725 844 SUPERFAMILY Homeodomain-like 19 83 IPR009057 -
Gso4g0725 844 Pfam Homeodomain 20 78 IPR001356 GO:0003677
Gso4g0725 844 Pfam MEKHLA domain 703 843 IPR013978 -
Gso4g0725 844 CDD bZIP 72 111 - -
Gso4g0725 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 5 844 IPR044830 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0725 Gso-Chr4 7169972 7176183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0725 16 844 Homeobox Transcription Factor Family AT4G32880 80.192 0.0 1390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso4g0725 START 2.6e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0725 K09338 - gmx:100815727 1687.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0725 4 7169972 7176183 Gso6g0729 6 6749651 6755768 GST