Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0724 ATGGAAGCACAAGAGTTTTTCCAGAACACCTTCTGTCCCCAATTCCCCTCAGACAGCAACATCACTCCCTCCAACGCCAACCCCTCCGCCGCCACCACCGACCACTTCCTCGTAGAAGACTTCTTCGACTTCTCCAACGACGACGACGCCACCTTCGACTCCCTCCCCACCGACGTCGACTCCCCCACCGTTACCCCTGTCGACACCACCACCAACTCCAATTTCCCCGCCTCCGCAGACGCCCATTTCCCCGGTGACCTCTCCGTCCCGTATGATGATCTTGCGGAATTGGAATGGCTGTCGAAATTTGCGGACGAATCGTTTTCGAGCGAGGATTTGCAGAAGCTGCAGCTGATAACGGGTGTGAGAGCGCAAAACGATGCTGCATCGTCTGAAACGCGTGACCCAAACCCGGTTATGTTCAACCCGCAAGTGTCGGTTCGGGGCAAGGCTCGGAGCAAGCGGACACGTGGACCCCCATGCAACTGGACCTCTCGCCTCGTTGTGCTCTCCCCGAACACGAAGTCGTCGTCGTCTTCTCACTCCGGCGCGGAAGGCGGCAGCGAGGGGCGGAAGTGCCTGCATTGCGCAACGGACAAGACCCCACAGTGGCGGACTGGGCCCATGGGCCCAAAAACGCTCTGCAACGCGTGCGGCGTGAGGTACAAGTCTGGGCGGCTGGTGCCAGAGTACAGGCCCGCCGCGAGCCCAACGTTTGTTCTGACGAAGCACTCGAATTCGCACCGCAAGGTGCTGGAGCTGCGGCGGCAGAAGGAAATGGTGAAGGTCCAGCACCAGCAGCATCAGTTTCTCCAATTGCAGCATCAGCAGAACATGATGTTCGATGTCCCATCATCCAACGGTGAGGATTTCCTCATCCATCAGCACGTGGGCCCAAATTTCACGCACCTCATCTAG 918 0.5871 MEAQEFFQNTFCPQFPSDSNITPSNANPSAATTDHFLVEDFFDFSNDDDATFDSLPTDVDSPTVTPVDTTTNSNFPASADAHFPGDLSVPYDDLAELEWLSKFADESFSSEDLQKLQLITGVRAQNDAASSETRDPNPVMFNPQVSVRGKARSKRTRGPPCNWTSRLVVLSPNTKSSSSSHSGAEGGSEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVKVQHQQHQFLQLQHQQNMMFDVPSSNGEDFLIHQHVGPNFTHLI* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0724 305 CDD ZnF_GATA 192 239 IPR000679 GO:0006355|GO:0043565
Gso4g0724 305 PIRSF Txn_fac_GATA_plant 19 283 IPR016679 GO:0003677|GO:0005634|GO:0045893
Gso4g0724 305 PANTHER GATA TRANSCRIPTION FACTOR 1 305 - -
Gso4g0724 305 SMART GATA_3 187 237 IPR000679 GO:0006355|GO:0043565
Gso4g0724 305 MobiDBLite consensus disorder prediction 128 192 - -
Gso4g0724 305 Pfam GATA zinc finger 193 226 IPR000679 GO:0006355|GO:0043565
Gso4g0724 305 ProSiteProfiles GATA-type zinc finger domain profile. 187 223 IPR000679 GO:0006355|GO:0043565
Gso4g0724 305 ProSitePatterns GATA-type zinc finger domain. 193 218 IPR000679 GO:0006355|GO:0043565
Gso4g0724 305 PANTHER GATA TRANSCRIPTION FACTOR 1 305 - -
Gso4g0724 305 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 188 251 - -
Gso4g0724 305 MobiDBLite consensus disorder prediction 166 185 - -
Gso4g0724 305 Gene3D - 186 237 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0724 Gso-Chr4 7143433 7144961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0724 30 305 C2C2-Gata Transcription Factor Family AT4G32890 48.525 8.00e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso4g0724 GATA 2.7e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0724 - - gmx:100775634 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0724 4 7143433 7144961 Gso6g0728 6 6718219 6719852 GST