Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0718 ATGAGAGTTTCAACAGAGACAGAGCCGGAGACTAAAAAGATAAAACGCATTCGCGGCGGCGGGGACTCGAGCAAGCACCCTTTGTACCGCGGCGTGCGGATGCGGAACTGGGGGAAGTGGGTGTCGGAAATCCGCGAGCCGAGGAAGAAATCGCGGATATGGCTAGGCACATTCCCCACGCCGGAAATGGCGGCGAGAGCGCACGACGTCGCCGCTCTCAGCATCAAAGGCCCCGCCGCCATTCTCAACTTCCCTCACTTGGCCAACTCGCTCCCCCGCCCGGCTTCGCTGGCGCCGCGCGACGTTCAAGCCGCGGCGGCGAAGGCGGCGCACATGGACCCTTCCTCCCTCTCCTCCTTGGTCTCCGCAATGGACTTGTCCTCTGCCTCTGACGAGTTGAGCCAAATCATAGAGCTTCCTTCTTTGGAAAGCACCGATGATGGCTCTGTTGACTTAAAGAAGGAGTTTGTTTTTGTTGATTCCCTTGATGCTTGGATGTATCAGCCACCCTTTGGTTTTGACACCGAACAAGACACTGGTTTCGAGGGTTTGATGTGGAATTACTAG 567 0.5697 MRVSTETEPETKKIKRIRGGGDSSKHPLYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGPAAILNFPHLANSLPRPASLAPRDVQAAAAKAAHMDPSSLSSLVSAMDLSSASDELSQIIELPSLESTDDGSVDLKKEFVFVDSLDAWMYQPPFGFDTEQDTGFEGLMWNY* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0718 188 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Gso4g0718 188 CDD AP2 27 87 IPR001471 GO:0003700|GO:0006355
Gso4g0718 188 MobiDBLite consensus disorder prediction 1 25 - -
Gso4g0718 188 Gene3D AP2/ERF domain 28 86 IPR036955 GO:0003700|GO:0006355
Gso4g0718 188 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Gso4g0718 188 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Gso4g0718 188 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Gso4g0718 188 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 12 171 - -
Gso4g0718 188 MobiDBLite consensus disorder prediction 1 23 - -
Gso4g0718 188 Pfam AP2 domain 27 77 IPR001471 GO:0003700|GO:0006355
Gso4g0718 188 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677
Gso4g0718 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0718 Gso-Chr4 7035430 7036605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0718 5 187 AP2-EREBP Transcription Factor Family AT5G11590 60.287 3.75e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso4g0718 AP2 4.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0718 K09286 - gmx:100813069 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0718 4 7035430 7036605 Gso6g0721 6 6621034 6622261 GST