Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0712 ATGTGTAACAGTAACACCCTCAAGTTCAACCCCTTTAAGAACCGTTTGCTAATAATGTTCGTGCTGGTTCTTTCTCTCCCCTCCAATGTTCAATCCCAAGCCAAAGATAGTGAAGAAAAGAACCTGCCAGAACTCCCTCAAATGGTTCATCCAAGCAAGGGAATAATAATAGCAGTTCTCTCCACAATGTTTGCCATAGCATTTCTCTTACTTCTCTATGTTAAATTCTGTCGAGTTATCCCTCATGAACTCCTTAGGCAAAACTCAAATCTCCAAAACTTTCAGGGCCTAACTCGACCAAGGTCTAGAGTTTCTGGTATTGACAAACAAGTAATTGAAACACTTCCTTACTTCAAGTTTTCTTCCCTTAAGGGTTCCAAAGAAGGCCTAGAATGCACGGTTTGTCTCTCAAAATTTGAGGACACGGAGACTCTAAGGCTTCTTCCAAAGTGCAAGCACGCTTTCCACATGAATTGCATTGACAAGTGA 489 0.4131 MCNSNTLKFNPFKNRLLIMFVLVLSLPSNVQSQAKDSEEKNLPELPQMVHPSKGIIIAVLSTMFAIAFLLLLYVKFCRVIPHELLRQNSNLQNFQGLTRPRSRVSGIDKQVIETLPYFKFSSLKGSKEGLECTVCLSKFEDTETLRLLPKCKHAFHMNCIDK* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0712 162 Pfam RING-like zinc finger 131 160 IPR001841 -
Gso4g0712 162 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 25 162 - -
Gso4g0712 162 PANTHER RING-H2 FINGER PROTEIN ATL4J 25 162 - -
Gso4g0712 162 SUPERFAMILY RING/U-box 111 162 - -
Gso4g0712 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 162 IPR013083 -
Gso4g0712 162 ProSiteProfiles Zinc finger RING-type profile. 132 162 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0712 Gso-Chr4 6986813 6987589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0712 41 162 C3H Transcription Factor Family AT2G20030 50.000 2.80e-36 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0712 K10664 - gsj:114408084 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0712 4 6986813 6987589 Gso6g0714 6 6564312 6566210 GST