Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0671 ATGCAAAAGGAAAAGGAAGCAATTATCAAGGAGGGGACTACGGAAATAGAAATGGAAGGAACTCGTGCAAAAGAGGGAACCCTACCACCGGGATTTCGATTTCACCCTACTGATGAAGAACTTGTCACTTGCTATCTCGTAAATAAGATATCAGATTCTAATTTTACAGGCAGAGCAATAACTGATGTTGATCTCAACAAATGTGAGCCATGGGAGCTTCCAGGGAAAGCAAAGATGGGAGAAAAAGAATGGTACTTCTTCAGTCTGAGAGACCGTAAATACCCAACGGGTGTGAGAACAAATCGAGCAACTAACACCGGGTATTGGAAGACCACAGGGAAAGACAAGGAGATCTTCAACAGTGAAACATCGGAGTTGATTGGCATGAAGAAGACTTTAGTTTTCTACAAAGGCAGAGCTCCCAGAGGAGAAAAAAGCAACTGGGTCATGCATGAATACCGCATTCACTCAAAATCCAGCTATAGAACTAACAGGGATGAATGGGTGGTTTGCCGGGTATTCAAGAAGAGCGGTGGTGCAAAGAAGTACCATTCCTCCAACCATGCAAGAACAGTGAATCCATACAGCTTGGAAATTGGACCAAGTATCATGCCACCACCAATGATGCAACTGGGAGATCCTAGTGCTCATTTCCTTTATGGAAGAAACTACATGAACAGTGCTGAGTTAGCTGAACTTGCTAGGGTTTTAAGAGGGGGTGGATCAACCAGTAGTGTCAACCTCCCAATTCAGTCTCAGTTGAGCTACCCTACATCATCATCAGCTGGAGGAGGAGGATTCATCATTTCAGGGCTCAATTTGAACCTTGGAGGAGGAGCAACAGCCACAACACAACCCATTTTAAGGCCAATGCAACCTTCTCCTCCTGTCCATACAATGGCCCAAGTACTTGATGTGAATTCCAGCATGATGACAACCAGTTCTCTTGGTGCTGAGAATAATGTTGGTTATGGAACAGAAGTGAGTAACAATATGAATTCTCATGGGAATAGGTATATGGGCATGGACCACCATTGCATGGATCTTGACAACTATTGGCCTTCCTACTAA 1071 0.4407 MQKEKEAIIKEGTTEIEMEGTRAKEGTLPPGFRFHPTDEELVTCYLVNKISDSNFTGRAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSETSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSSYRTNRDEWVVCRVFKKSGGAKKYHSSNHARTVNPYSLEIGPSIMPPPMMQLGDPSAHFLYGRNYMNSAELAELARVLRGGGSTSSVNLPIQSQLSYPTSSSAGGGGFIISGLNLNLGGGATATTQPILRPMQPSPPVHTMAQVLDVNSSMMTTSSLGAENNVGYGTEVSNNMNSHGNRYMGMDHHCMDLDNYWPSY* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0671 356 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 353 - -
Gso4g0671 356 ProSiteProfiles NAC domain profile. 28 176 IPR003441 GO:0003677|GO:0006355
Gso4g0671 356 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 13 353 - -
Gso4g0671 356 Pfam No apical meristem (NAM) protein 29 155 IPR003441 GO:0003677|GO:0006355
Gso4g0671 356 Gene3D NAC domain 37 179 IPR036093 GO:0003677|GO:0006355
Gso4g0671 356 SUPERFAMILY NAC domain 23 176 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0671 Gso-Chr4 6552711 6555659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0671 22 356 NAC Transcription Factor Family AT2G24430 51.821 1.41e-112 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso4g0671 NAM 3.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0671 - - gmx:100805060 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0671 4 6552711 6555659 Gso6g0672 6 6205644 6208536 GST