Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0643 ATGGATGAATATTCTGCTAAAAGAGCCACTGATGGGGTGGTAGTCCCTAGAAAGGGGATACGCCATGCATTTAGAGATACTGCTAACGCCAGAGATCAAAATGGTCAGGTGTGCAGCCGCATTACTTGTAGTAGCAGAGTCAATACTCCTAAAGGTGCTCAAATTGGTTCTTCTGAAAAAGGTAAATCTTTGAAACCTTCAATCCAATCTTCTTCAGCTGGCAAGGAAGCAATTGGAAGCTCCTCTAGAACATTTTTCAAGACTAATAGCCCAGGAAAACCGCTTATAAAGCCACGGAAATCACCATCATCTCAGTTAGAGACAGATTCATCTGAAATTAGTAGTGTACAGGATGATTCAGAAGTTTCAAAACTCGCCCCTCCCCCTGAAAAAAGTCAGACAAATGTTCAAGCTGAATTGGAAAATACAGTGTCTGGTAATGCCATGATGGAAGTAGGAAGCTCTAGTGTAGTATCCAATACAAGATCTCGGAGGAATTTTCATCCAAAGCCTGGATTAAGGGGCCAAGAAATTAAAAGCACTGGTCCAGTGACACGTGCTGGTACCAGTAGGTATGGATTGAGGAACCTCAAATGCAACACTATTTCTGATGTCATCCCTGCTGGTTGTTCACCTTCAGATTCAACCCTTAACAGAAAGAAGGATGTCATAAAAAAGAGAAATTGTGAAGGGGAAGGTAGTTCCACTGGTAGAGGGAAGAAAATGAGCGGGTCTTCATTAGAAGCACGAAATTCTGGCTCCAGAAATGGCATATCTATCTCTGATTCAAGAATATCTAGGAATACTCCTCACAGGGACAGGTCAGACAGCAACATGGCACCAGTTAGAACTCGAAAATTGATTAGTGGTCGTACCAGGGGAAGGCTTTCTAGCCAAGGAAATGCCAATCCCATGCCACCTAATGAGTCCCTTGTCAAGATACCTGATTTGCCCCGTTCTGGTGGTCTTAATATTCCTGGTGTATCACGTCATACTTCTGTAGATAGTCCCTTAAGTTGTCCTAGCTCTCATAGTAGACCAGTTACTGGCAGTGAGGAGTTATATGGTGTTATGCCTGTATCTCCTTCAGAGTATGGCCTCACTCATTCTCTAATGAATCTGGATAGCTTTCGACGACGTTACAACATGGATAGTATTGCAGAGGTATTGGTGGCACTTGATAGGATTGAACAAGATGTTGAGCTAACACATGAGCAAATTCGTTTACTGGAATCCAACTTGTTCCTAACTGGACTAAACTTCTACGATCCACATAGAGACATGCGATTGGACATTGATAACATGTCGTATGAGCAACTGCTGGCTTTGGAAGAGAGGATGGGTACTGTGAGCACAGCTCTAACAGAGGAAACACTATCAGAATGCCTAAAGAAAAGTTTCTACCAGTCCCCACCCTCTGAAAATGCAGCTGAGAGTTGCAATGAACATAAGGATGATACCAAATGCAGCATTTGCCAGGAGGAATATGTGGCTGCAGATGAAGTGGGGAGTCTGCAATGCGAGCATGCGTATCATGTGGCTTGCATACAGCAGTGGCTACAGCTAAAGAACTGGTGCCCTATTTGCAAAGCATCAGTGGCACCGTCAAATTCATCACCATCCCAATGA 1629 0.4359 MDEYSAKRATDGVVVPRKGIRHAFRDTANARDQNGQVCSRITCSSRVNTPKGAQIGSSEKGKSLKPSIQSSSAGKEAIGSSSRTFFKTNSPGKPLIKPRKSPSSQLETDSSEISSVQDDSEVSKLAPPPEKSQTNVQAELENTVSGNAMMEVGSSSVVSNTRSRRNFHPKPGLRGQEIKSTGPVTRAGTSRYGLRNLKCNTISDVIPAGCSPSDSTLNRKKDVIKKRNCEGEGSSTGRGKKMSGSSLEARNSGSRNGISISDSRISRNTPHRDRSDSNMAPVRTRKLISGRTRGRLSSQGNANPMPPNESLVKIPDLPRSGGLNIPGVSRHTSVDSPLSCPSSHSRPVTGSEELYGVMPVSPSEYGLTHSLMNLDSFRRRYNMDSIAEVLVALDRIEQDVELTHEQIRLLESNLFLTGLNFYDPHRDMRLDIDNMSYEQLLALEERMGTVSTALTEETLSECLKKSFYQSPPSENAAESCNEHKDDTKCSICQEEYVAADEVGSLQCEHAYHVACIQQWLQLKNWCPICKASVAPSNSSPSQ* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0643 542 MobiDBLite consensus disorder prediction 156 189 - -
Gso4g0643 542 SUPERFAMILY RING/U-box 482 535 - -
Gso4g0643 542 MobiDBLite consensus disorder prediction 291 306 - -
Gso4g0643 542 Pfam Ring finger domain 488 530 IPR001841 -
Gso4g0643 542 MobiDBLite consensus disorder prediction 266 280 - -
Gso4g0643 542 MobiDBLite consensus disorder prediction 218 234 - -
Gso4g0643 542 SMART ring_2 489 529 IPR001841 -
Gso4g0643 542 MobiDBLite consensus disorder prediction 43 136 - -
Gso4g0643 542 MobiDBLite consensus disorder prediction 101 136 - -
Gso4g0643 542 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 534 - -
Gso4g0643 542 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 534 IPR045191 GO:0061630
Gso4g0643 542 Coils Coil 393 413 - -
Gso4g0643 542 MobiDBLite consensus disorder prediction 326 349 - -
Gso4g0643 542 MobiDBLite consensus disorder prediction 43 89 - -
Gso4g0643 542 MobiDBLite consensus disorder prediction 205 350 - -
Gso4g0643 542 ProSiteProfiles Zinc finger RING-type profile. 489 530 IPR001841 -
Gso4g0643 542 MobiDBLite consensus disorder prediction 238 265 - -
Gso4g0643 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 451 536 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0643 Gso-Chr4 6272336 6276739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0643 375 530 C3H Transcription Factor Family AT2G15530 41.667 2.79e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0643 - - gmx:100787213 1077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0643 4 6272336 6276739 Gso6g0645 6 5972600 5977043 GST
Gso17g1681 17 31534104 31540095 Gso4g0643 4 6272336 6276739 PCT
Gso4g0643 4 6272336 6276739 Gso17g1681 17 31534104 31540095 PCT