Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0628 ATGTTGCATTGGAAAAACGTTGGTGCAGGAAGAAAATCGCAGAAAACGGGCATTTCCAGAATAGGTTTAAGGAGGCGGGTCGAATATCTCCGGAAGCTTCCGATCCATCATCGGGTTGGTGTTGGTGTTTGTTTATGCGTGTCGCTGATGATGGAGGATCAAGCGAATCAAGTGCCACCTCCGCGGGATGAAGAGGAGGATTCTCAGAAGGAGGAAGTGATTGCGAAGGTTAACAAACTCATGGAGAAGATAACTTCTGCACCCGATAACCCTAACGCCACCGTCCTCCACTCCCTTGCCTCTATTCTTGAAGCGCAAGAGTCACGATACATGGAAGAAAATGGTCATTCTTCCTCCATCACTGCACGTGCTGCGCATATCATTGGTCGTCTTGGCGGTTTAATCCGGGAAAATGATGAGTTCTTTGAGTTGATATCTTCAAAGTTTCTGTTAGAAACAAGATACTCGACTTCCATTCAAGCTGCTGCTGGCAGACTTTTGCTGTGCTGTTCCCTCACTTGGATTTATCCTCATGTTTTTGAAGAATCTGTCATGGAAAACATTAAAAATTGGGTGATGGATGATAACACTGGGTTGCCTGCCGAAGAGCAGAATTTGAAGCATAATCCAGATAGAAGGGACGCTGCCTCGGACTCTGAAATGTTGAAAACCTATTCTACTGGACTCCTTGCTGTGTGTTTGGTCGGTCAAGGTCCAATAGTGGAAGACGTATTGACATCTGGCTTGTCAGCTAAGCTAATGCGTTATCTTCGTATAAGTGTGCTACGAGAGACAAGTGGCAACCAGAAAGATGTTACTCATATTACAGAGAGTAGGCATGCATCTGCGAATACTTCAGGGAGAGGTAGAGACGATGGTCGTGGTAGATTTCGCCAGCTCCTCGAATCAAATCATTTAGATGATACTAGGATGATTGACGAGAGATCTTTAGATGATGTAACTCTTGAAAGGGGTCCAGATAGAAGCATTAGTGGACAAACTTGCCAAGAAGGATCTTGGATAGATGGTGAACCACCCGATGGACTTGGTGGTGAAGGTGCTGATGTCCACGAGGTAGATTCTGATGGGGAGGATAGATGGCACTGTAGAGATATACGTGATGGAAGGATAAAATATGGTGAGCACGACGACAATATTAGAGATGACTCTTCAAGGCGGCGTGCAAACCGTGGATGGGGAAGATCTAGAGGGAAAGGTAGGCTCAGTGAAGGGGTTGTAGAAAGTGATCCCATTTTGTCATCTCCTGGATCTGGAAGTCGATTAGGACAGGGGCGAAGTGTTAGAGATAGAAGCATATTGAGGAATGCTGACATTAGGAGGGTGACTGATTCTAAGAAGACCCTTGGCAGGACCACCCCTTCTGAGGCATCTGCTTCTGCTTCAGAAAGAGAGGATAATGATGATTGTTTCCAAGAGTGCCGAATTGGAAGTAAAGATATTACCGATCTTGTCCGGAAAGCAGTCCGAGCGGCTGAAGCTGAAGCTAGATCAGCCAATGCACCTGAAGAAGCTGTGAAAGCAGCTGGTGATGCTGCCGCTGACCTTGTTAAAACTGCAGCTTCTGAGGAATATAAATCCACTAATGATGAAGAAGCAGCTTTTTTGGCTGCTTCGAGAGCTGCATCAACTGTTATTGATGCTGCATCTGCAGTTGAAGTTTCAAGGAGTTCTATCTGCGACAGTACTGTGACAGAGAATGTGAGTGGCAAAGAAATGGAAACTAACGAGGATGTTGAAGAGTACTTCATCCCAGATACTCAATCACTTGCACAGTTGAGGGAAAAATATTGCATTCAGTGTCTGGAGTTACTTGGAGAATATGTAGAAGTTCTTGGCCCTGTGTTGCATGAGAAGGGGGTTGATGTGTGTCTTGCACTTCTGCAGCAGAATTCTAAACATTGGGAGGCATCCAAGGTTGCTTTGCTGTTGCCTGATATCATGAAGCTAATCTGTGCTTTGGCCGCACATAGGAAATTTGCTGCACTATTTGTGGACCGTGGGGGAATGCAAAAGCTGCTTGATGTCCCTAGAATGCCACAAACTTTCTTCGGCCTTTCTTCTTGTCTATTTACTATTGGTTCTCTTCAGGGAATAATGGAACGAGTTTGTGCTCTTCCATCAAAAGTTGTTGAGCGTGTTGTTGAGTTAGCCCTCCAACTCCTTGACTGCAATCAAGACCAAGCCCGTAAGAATGCAGCATTGTTTTTTGCTGCTGCATTTGTCTTTAGAGCAGTTCTTGATGCCTTTGATTCCCTTGATGGATTACAAAAATTACTTGGCCTTCTAAATGATGCTGCTTCAGTAAGATCAGGAGTAAATTCTGGAGCCTTGAGTTTATCTAACTCAGGATCACTTCGAAATGATCGATCATCCGCTGAAGTGCTGACATCATCTGAGAAGCAGATAGCCTATCACACTTGTGTTGCTTTGCGGCAATATTTCAGGGCACATCTCCTTGTATTAGTGGATTCCATTCGTCCAAACAAAAGCAATCGTAGTGCTGCTAGAAATATTCCAAGTGTAAGGGCTGTGTACAAGCCGCTTGATATTAGTAACGAGGCAATGGATGCAGTATTCCTACAATTACAAAAGGATCGGAAGTTAGGTCCTGCATTTGTGAGAACACGTTGGCTAGCAGTTGAGAAGTTCTTGGCATCTAATGGACATATTACTATGTTGGAATTATGTCAGGCCCCACCTGTGGAGCGATATCTGCATGATTTGCTTCAGTATGCGTTGGGTGTTCTGCACATTGTTACATTAGTACCTAGCAGTCGTAAGATGATTGTAAATGTAACATTAAGCAATAATCGCGTTGGTATCGCGGTAATTTTGGATGCTGCAAATATAGCTAGTAATCATGTGGACCCTGAGATAATTCAACCGGCATTAAATGTTTTAGTCAATCTTGTTTGCCCTCCTCCTTCAATCAGCAATAAACCAGCTATGTTTGCACAAGGTCAGCAATTCGCATCTTCCCAAACATCTATCGGTCCTCCCTCAGAGGCTAGAGATAGAAATGCTGAACGTAATGTCTCAGATAGAGCTGTTCACTCTACCAGCCAGATTGATCCTAGGGAGAGGAGTGGGGAGCCCAATGCTGTAGATCGAGGCAGTGCTGCAGGATTTAGTACACAGCCTGTTCATAGTACTCCACAAACTCCTGTTGCTTCTGCATCTTCAGGATTGGTTGGCGACCGAAGGATATCTTTGGGTGCAGGAGCAGGTTGTGCTGGCCTTGCTGCACAATTGGAACAAGGATATCGTCAGGCAAGAGAGGTTGTCCGCTCTAATAATGGTATAAAGGTTCTTCTGCATCTCCTCCAACCGCGCATATATTCGCCTCCTGCTGCTCTGGACTGTCTTCGTGCTCTAGCATGTCGGGTCCTGCTTGGATTAGCCAGAGATGATACTATTGCACACATATTGACAAAGCTTCAGGTTGGGAAAAAGCTATCGGAACTGATTCGGGATTCGGGCAGCCTAACACTTGGAACAGAGCAGGGTAGGTGGCAAGCTGAACTTTCCCAGGCTGCAATTGAGCTAATTGGGATTGTGACTAATTCTGGGCGTGCAAGTACATTAGCTGCTACTGATGCAGCTACTCCAACTTTAAGGCGCATAGAAAGAGCAGCTATAGCTGCTGCCACTCCTATTTCTTACCATTCAAGGGAACTCCTGCTCCTAATTCATGAGCACCTACAGGCATCTGGATTGGCGCAAACTGCTTCTATGTTGCTTAAAGAGGCTCAGTTGACTCCTTTGCCTTCTTTGGTTCCTCCCTCTTCTCTTGCACAACAACCCATCACACAGGAAGTTTCTTCAACACAAATTCAGTGGCCCTCTGGTCGTGCTCCTTCTGGATTTCTCACTTACAGAGTAATGTTTAATGCAAAGGATGAGGATGCCGGCTTGAAAAGTGATTCTGTCTCTGCAAAGAAAAAATCCCTGACTTTCTCATCATCTTTTCATTCAAGACTTCAACTCCTTGACTCTCAGTCATCAGCCAGGAAATTGTCAAATACAGGTAAAGAGTCATCAGAAACTAGTGTGGTAGAGACTACATATGGATCTTCAGTGAAACATAACATTGATACTGGATCTCAGTTTAAGACTCCAATTACCTTGCCAGCGAAACGAAAGTTATCTGATTTGAAGGATATATCAATGTTTTCATCGTCTGGAAAACGATTAAACATTGGGGATCAAGGACTTCGCTCTCCTATTTGTTCAAGTGCAATTCGTAAAAGCAGCCTGCAGACTGATGCTGTTGGGCTTTTCACACCAACTTGTAACCTGAAACAGAGCCGTTGTACGATTGACTTGGTGGATGAGAACCAGAGTATTTCAAATCTAGGTCAGATGACACCATCTTCCCAAGTATTAAATGACCTTCAGCCCAACAATGCTGAGCGTGTAACATTAGATTCTTTGGTGGTTCAATATTTGAAGCATCAGCATCGCCAATGTCCAGCTCCTATTACCACTCTTCCTCCACTGTCTCTTCTGCACCCGCATGTCTGTCCAGAACCAAAGCGAAGCCTTGATGCCCCTTCTAATGTGACAGCTCGGTTTGGTACCCGTGAATTTAAATATATGTATGGGGGAGTGCATGGGAATCGCAGGGATCGCCAATTTGTTTACAGTCGGTTTAAGCCATGGCGTACTTGTCGGGATGATGCTGGTGCCTTGTTAACATGCATTACATTTGTCGGGGACTCTTCTCATATTGCTGTTGGAAGCCATAATGGGGAGCTCAAATTTTTTGACTCCAACAACAGCAATGTGGTGGAGAGCTACACAGGTCACCAGTCTCCTTTGACTCATGTTCAGTCTTTTGTTTCTGGTGAGACCCAGCTATTACTTTCTTCAAGCTCCCAAGATGTTAGGTTGTGGGATGCAACATCAATTTTAGGTGGTCCTAGCCATTCATTTGAAGGATGCAAGGCTGCCAGGTTTAGCAATTCTGGGAATGTTTTTGCAGCCTTGTCATCAGAATCTGCACGACGGGAAATCCGCTTGTATGATATCCAAACATGTCATTTAGAGTCAAACTTTTCAGATACATTTGCAGCTTCTACAGGGCGAGGTCATGTTTATTCGTTAATCCATTTTAACCCTTCTGACTCAATGCTGCTTTGGAATGGTGTCTTATGGGACCGGCGGGATTCTGGGCCTGTGCATCGCTTTGATCAGTTTACAGACTATGGTGGTGGAGGCTTTCATCCTGCTGGCAACGAGGTTATTATAAACTCTGAAGTCTGGGATCTGCGCAAGTTCAGACTGTTACGCAGTGTACCTTCACTAGATCAAACATCAATAACATTCAATGCACGTGGTGATGTAATGTATGCAATCTTAAGGAGAAATCTTGAGGATGTAATGTCAGCAGTCCACACTCGTCGCGTCAAGCATCCTCTTTTTGCAGCTTTCCGCACAGTGGATGCGATAAATTATTCTGACATTGCAACTATCCCTGTGGATCGCTGTGTTCTTGATTTTGCAGCTGAACCAACAGATTCATTTGTTGGGCTGATTACTATGGATGATCAAGATGAGATGTATGCTTCTGCCAGAATCTATGAAATTGGTCGTCGGAGGCCAACTGATGATGATTCTGATCCTGATGATGCTGAAAGTGAGGAGGAAGACGAGGACGATGATGACGACGATCCTGATGTTGATCCTCTGTTAAGCCCTGGTCTTGGTGGGGATAGTGGGAGTGATGCTGATGACATGAGCAATGATGATGATGATAGTGTGAGTGATCTGGATGAAGATGAAGATGGAGATTTCATTTTGGATGATGTAGACTTTGATGGAGGACCTGGCATATTGGAGATTGTGACAGAAGGTGATGAGGAGGATGATGATAGTCAACTACTTGAATCCCTAAGTAGTAGTGACGATGAGGATTTTGTGGGTAATGGCTTTGGTTATTAA 5964 0.4462 MLHWKNVGAGRKSQKTGISRIGLRRRVEYLRKLPIHHRVGVGVCLCVSLMMEDQANQVPPPRDEEEDSQKEEVIAKVNKLMEKITSAPDNPNATVLHSLASILEAQESRYMEENGHSSSITARAAHIIGRLGGLIRENDEFFELISSKFLLETRYSTSIQAAAGRLLLCCSLTWIYPHVFEESVMENIKNWVMDDNTGLPAEEQNLKHNPDRRDAASDSEMLKTYSTGLLAVCLVGQGPIVEDVLTSGLSAKLMRYLRISVLRETSGNQKDVTHITESRHASANTSGRGRDDGRGRFRQLLESNHLDDTRMIDERSLDDVTLERGPDRSISGQTCQEGSWIDGEPPDGLGGEGADVHEVDSDGEDRWHCRDIRDGRIKYGEHDDNIRDDSSRRRANRGWGRSRGKGRLSEGVVESDPILSSPGSGSRLGQGRSVRDRSILRNADIRRVTDSKKTLGRTTPSEASASASEREDNDDCFQECRIGSKDITDLVRKAVRAAEAEARSANAPEEAVKAAGDAAADLVKTAASEEYKSTNDEEAAFLAASRAASTVIDAASAVEVSRSSICDSTVTENVSGKEMETNEDVEEYFIPDTQSLAQLREKYCIQCLELLGEYVEVLGPVLHEKGVDVCLALLQQNSKHWEASKVALLLPDIMKLICALAAHRKFAALFVDRGGMQKLLDVPRMPQTFFGLSSCLFTIGSLQGIMERVCALPSKVVERVVELALQLLDCNQDQARKNAALFFAAAFVFRAVLDAFDSLDGLQKLLGLLNDAASVRSGVNSGALSLSNSGSLRNDRSSAEVLTSSEKQIAYHTCVALRQYFRAHLLVLVDSIRPNKSNRSAARNIPSVRAVYKPLDISNEAMDAVFLQLQKDRKLGPAFVRTRWLAVEKFLASNGHITMLELCQAPPVERYLHDLLQYALGVLHIVTLVPSSRKMIVNVTLSNNRVGIAVILDAANIASNHVDPEIIQPALNVLVNLVCPPPSISNKPAMFAQGQQFASSQTSIGPPSEARDRNAERNVSDRAVHSTSQIDPRERSGEPNAVDRGSAAGFSTQPVHSTPQTPVASASSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAREVVRSNNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELIRDSGSLTLGTEQGRWQAELSQAAIELIGIVTNSGRASTLAATDAATPTLRRIERAAIAAATPISYHSRELLLLIHEHLQASGLAQTASMLLKEAQLTPLPSLVPPSSLAQQPITQEVSSTQIQWPSGRAPSGFLTYRVMFNAKDEDAGLKSDSVSAKKKSLTFSSSFHSRLQLLDSQSSARKLSNTGKESSETSVVETTYGSSVKHNIDTGSQFKTPITLPAKRKLSDLKDISMFSSSGKRLNIGDQGLRSPICSSAIRKSSLQTDAVGLFTPTCNLKQSRCTIDLVDENQSISNLGQMTPSSQVLNDLQPNNAERVTLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARFGTREFKYMYGGVHGNRRDRQFVYSRFKPWRTCRDDAGALLTCITFVGDSSHIAVGSHNGELKFFDSNNSNVVESYTGHQSPLTHVQSFVSGETQLLLSSSSQDVRLWDATSILGGPSHSFEGCKAARFSNSGNVFAALSSESARREIRLYDIQTCHLESNFSDTFAASTGRGHVYSLIHFNPSDSMLLWNGVLWDRRDSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTSITFNARGDVMYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFAAEPTDSFVGLITMDDQDEMYASARIYEIGRRRPTDDDSDPDDAESEEEDEDDDDDDPDVDPLLSPGLGGDSGSDADDMSNDDDDSVSDLDEDEDGDFILDDVDFDGGPGILEIVTEGDEEDDDSQLLESLSSSDDEDFVGNGFGY* 1988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0628 1987 ProSiteProfiles LIS1 homology (LisH) motif profile. 1229 1261 IPR006594 GO:0005515
Gso4g0628 1987 MobiDBLite consensus disorder prediction 1881 1902 - -
Gso4g0628 1987 MobiDBLite consensus disorder prediction 437 453 - -
Gso4g0628 1987 MobiDBLite consensus disorder prediction 1868 1987 - -
Gso4g0628 1987 MobiDBLite consensus disorder prediction 1917 1943 - -
Gso4g0628 1987 MobiDBLite consensus disorder prediction 268 283 - -
Gso4g0628 1987 PANTHER BNAA03G51310D PROTEIN 1047 1334 - -
Gso4g0628 1987 PANTHER BNAA03G51310D PROTEIN 1339 1868 - -
Gso4g0628 1987 PANTHER BNAA03G51310D PROTEIN 369 1012 - -
Gso4g0628 1987 PANTHER BNAA03G51310D PROTEIN 65 307 - -
Gso4g0628 1987 MobiDBLite consensus disorder prediction 995 1068 - -
Gso4g0628 1987 Gene3D - 1558 1882 IPR015943 GO:0005515
Gso4g0628 1987 MobiDBLite consensus disorder prediction 268 295 - -
Gso4g0628 1987 MobiDBLite consensus disorder prediction 1046 1067 - -
Gso4g0628 1987 MobiDBLite consensus disorder prediction 317 362 - -
Gso4g0628 1987 MobiDBLite consensus disorder prediction 380 475 - -
Gso4g0628 1987 MobiDBLite consensus disorder prediction 380 396 - -
Gso4g0628 1987 SUPERFAMILY ARM repeat 604 1116 IPR016024 -
Gso4g0628 1987 SUPERFAMILY WD40 repeat-like 1557 1789 IPR036322 GO:0005515
Gso4g0628 1987 MobiDBLite consensus disorder prediction 1956 1972 - -
Gso4g0628 1987 PANTHER VPRBP PROTEIN-RELATED 1339 1868 IPR033270 GO:0016567
Gso4g0628 1987 PANTHER VPRBP PROTEIN-RELATED 369 1012 IPR033270 GO:0016567
Gso4g0628 1987 PANTHER VPRBP PROTEIN-RELATED 65 307 IPR033270 GO:0016567
Gso4g0628 1987 PANTHER VPRBP PROTEIN-RELATED 1047 1334 IPR033270 GO:0016567
Gso4g0628 1987 SMART WD40_4 1645 1683 IPR001680 GO:0005515
Gso4g0628 1987 SMART WD40_4 1600 1640 IPR001680 GO:0005515
Gso4g0628 1987 SMART WD40_4 1557 1597 IPR001680 GO:0005515
Gso4g0628 1987 SMART Lish 1229 1261 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0628 Gso-Chr4 6117002 6126316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0628 1584 1790 U-box Gene Family AT2G33340 25.000 1.09e-06 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0628 K11789 - gmx:100796030 3423.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0628 4 6117002 6126316 Gso6g0631 6 5849776 5858420 GST