Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0625 ATGTCGATGTCATCTCTAGTTAGAAGACGCTCAAGCGACGAAATAACGAACTCGGCGTCGGTTTCCAGTAGCCTCTTTCCAGCATTTGGCACCACCATCTTTGATATTGAAGGTTACTTGAAGTCGAACCTAAGAAAATATGTCATTGCTCCCTATGACCGTAGATATCAATTGTGGCAAACGTTCCTAGTAGCATTGGTAGTGTACTCTGCATGGGCATCTCCATTCGAGCTAGCTTTCAGAGAACTGCTAGTTGGGTCGCTGTTGCCCGTTGATCTCCTTGTCGATGCCTTCTTTGCCGTTGATATAATCCTTACTTTTTTTGTGGCTTACTTGGATACATCAACCTATCTCCTCGTTGACGACCATAAGAAGATTGCTCTCAGGTACGTCAAAAAGTTACACTTCACCATGGATCTAGCCTCCACTGTTCCATTTGAGCAGATACACCAAATTTTGACGGGCAAACCAACCAAAAGCGAGGTCTCCGGTTTCCTAATTATGCTTAGACTATGGCGATTGAGGCGTGTTAGCGAACTCTTCGCAAGGCTAGAAAAAGACATACGAATCAACTACTCAGCAACAAGATTTTGCAAACTTATTTGCGTTACGCTATTTGCAATGCACTTCGCAGGCTGCACGTATTTTTGGTTGGCTGTCCAGCACAAAACACCCAAAAACACATGGATCGGAAACAAAACAGAGGATTTTAATGATTTGAGCGTCGGGTTGGGTTACACTTATTCCATGTACTGGTCTGTTGCAACCCTTACCACTGTTGGCTATGGAGATTTCTATGCAGTGAATTTAACGGAGAAGCTTTTCAGTACTATATACATGCTGTTTAACATCGGCCTCACTTCATATATAATCGGAAACATGACAAATCTGTTGGTTCATAGCTCTGTCCGAAACTTTGTCATGAGGGATGCTTTCAACAAAATATTACAATATGCAAACAAATATAGACTCCCGGAAGGCTTAAAGGAGCAAATGTTGGCACACATGCAATTGAAATTTCAGACTGCAGAGTTACAGCAAGAAGTGTTGCAAGACCTACCTAAAACAATAAGATCCAGCATTGCTCGGCATCTTTTCCAAAACATAGTTGAAACAACATATTTATTTAAAGGAGTCTCTGATGATTTTATCACCCAGCTGGTGTCAGAAACGAAAGCAGAATACTACCCATCTAAGGTTGACATTATCTTGCAAAATGAGATGCCAACATATTTCTACATTTTGGTATCTGGGTCACTGGATGTGTTGATATACAAGAATGGGTCCGAACAGTTTTTGTTCAAACTTGAATCTGGAGGCATGGCAGGAGAAATAGGCGTGATGTTTAATATTCCACAACCTTTTACAGTGAGAAGTAGAGGACTCTCCCAGGTCATACGAATCAATCATCACCATTTCAAGCAGATGGTGCAACCATTTAGTGATGATGGGAAGACAATCATCTACAACTTTATTAAGTATTTTAAGGGCCTCAAAGGCAAGGTGCTAGAAGAAATATATGTAACAGAATTGCTGGGTGACTTTCATGACGAGCATTTAACGCGAAATGAGGGTACAGACGAAGAAGTTTCAAGATATCAAGAAGCTCCATATACAGAAGGAAGAACAGGAAATTCCAAAGCACTGTCAAGCCCAGTCCCCGTAAGAGTTAAAATCCACGGACACCATCCCAATGAACACAAAATGGGAAACGAAACAACACCAAAGCTCATACTTCTCCCAAATTCGGTAGAAGATCTTTTCAGCGTTGCAGAGAAAAAATTTGGAAACAGAGGAAGCAAAATTCTTATGGCTGACGGCTCAGAAGTAGAAGAACTAAGCACGATAAGGGAGAATGACGAGTTATATATCCTCTAA 1878 0.4121 MSMSSLVRRRSSDEITNSASVSSSLFPAFGTTIFDIEGYLKSNLRKYVIAPYDRRYQLWQTFLVALVVYSAWASPFELAFRELLVGSLLPVDLLVDAFFAVDIILTFFVAYLDTSTYLLVDDHKKIALRYVKKLHFTMDLASTVPFEQIHQILTGKPTKSEVSGFLIMLRLWRLRRVSELFARLEKDIRINYSATRFCKLICVTLFAMHFAGCTYFWLAVQHKTPKNTWIGNKTEDFNDLSVGLGYTYSMYWSVATLTTVGYGDFYAVNLTEKLFSTIYMLFNIGLTSYIIGNMTNLLVHSSVRNFVMRDAFNKILQYANKYRLPEGLKEQMLAHMQLKFQTAELQQEVLQDLPKTIRSSIARHLFQNIVETTYLFKGVSDDFITQLVSETKAEYYPSKVDIILQNEMPTYFYILVSGSLDVLIYKNGSEQFLFKLESGGMAGEIGVMFNIPQPFTVRSRGLSQVIRINHHHFKQMVQPFSDDGKTIIYNFIKYFKGLKGKVLEEIYVTELLGDFHDEHLTRNEGTDEEVSRYQEAPYTEGRTGNSKALSSPVPVRVKIHGHHPNEHKMGNETTPKLILLPNSVEDLFSVAEKKFGNRGSKILMADGSEVEELSTIRENDELYIL* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0625 625 SUPERFAMILY cAMP-binding domain-like 305 491 IPR018490 -
Gso4g0625 625 ProSiteProfiles KHA domain profile. 556 625 IPR021789 -
Gso4g0625 625 Pfam Ion transport protein 57 298 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso4g0625 625 Pfam KHA, dimerisation domain of potassium ion channel 556 624 IPR021789 -
Gso4g0625 625 ProSiteProfiles cAMP/cGMP binding motif profile. 375 494 IPR000595 -
Gso4g0625 625 PRINTS EAG/ELK/ERG potassium channel family signature 92 102 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso4g0625 625 PRINTS EAG/ELK/ERG potassium channel family signature 103 112 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso4g0625 625 PRINTS EAG/ELK/ERG potassium channel family signature 246 263 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso4g0625 625 PRINTS EAG/ELK/ERG potassium channel family signature 272 283 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso4g0625 625 PRINTS EAG/ELK/ERG potassium channel family signature 290 299 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso4g0625 625 Gene3D - 57 300 - -
Gso4g0625 625 SMART cnmp_10 375 492 IPR000595 -
Gso4g0625 625 PANTHER POTASSIUM CHANNEL AKT1 22 624 IPR045319 GO:0005249|GO:0006813
Gso4g0625 625 CDD CAP_ED 375 488 IPR000595 -
Gso4g0625 625 SUPERFAMILY Voltage-gated potassium channels 51 299 - -
Gso4g0625 625 Pfam Cyclic nucleotide-binding domain 396 478 IPR000595 -
Gso4g0625 625 PANTHER POTASSIUM CHANNEL KAT3 22 624 - -
Gso4g0625 625 Gene3D Jelly Rolls 342 495 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0625 Gso-Chr4 6086849 6093522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0625 8 624 Ion Channels AT4G32650 56.101 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0625 K21867 - gmx:100794620 1228.39