Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0623 ATGTTTATTGGAAGGTTGAGGCTGCTTCTCTGTAGCATATTCGAGGCTGTTATCTGGCAGGTGGTGATTATTGAAGGAGGGGATATTCATGTGGTTGCCAGGCATGCCGCAAATTCAGTTATGGTGTCTTCTGGTGTAGGGTACACAGGTGATAAATCGTTAGATGTCACAACTGGAGGATGTGAAAATTTCTTCCACTGCCACACATGTGGTTGTTGCTACTCAACTCAGCTGAAAAACAGTCACCCTTGCGTGGAAGGAGCAATACATCACGATTGCCCCATTTGTTTTGAGTATTTGTTTGAATCTGTAAATGATGTCACTGTTTTGCTCTGTGGACATACAATACATAAGAGCTGCTTGAAGGAAATGAGGGAACATTTCCAGTATGCATGCCCTCTCTGCTTAAAGTCAGTTTGTGATATGTCAAAGGTTTGGGAGAAATTTGACTTGGAGATTGCTGCTACACCAATTCCAGAACCGTATCAAAACAAAATGGTCAGCATCCTTTGTTTTTCCTTTCTATATGATGATGTTGGATATTGTAGGTCATCATCATGTTAA 564 0.4131 MFIGRLRLLLCSIFEAVIWQVVIIEGGDIHVVARHAANSVMVSSGVGYTGDKSLDVTTGGCENFFHCHTCGCCYSTQLKNSHPCVEGAIHHDCPICFEYLFESVNDVTVLLCGHTIHKSCLKEMREHFQYACPLCLKSVCDMSKVWEKFDLEIAATPIPEPYQNKMVSILCFSFLYDDVGYCRSSSC* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0623 187 Pfam Ring finger domain 92 135 IPR001841 -
Gso4g0623 187 Pfam Zinc-ribbon 140 171 IPR039512 -
Gso4g0623 187 SMART ring_2 93 135 IPR001841 -
Gso4g0623 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 153 IPR013083 -
Gso4g0623 187 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 58 172 - -
Gso4g0623 187 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 58 172 - -
Gso4g0623 187 SUPERFAMILY Zinc hairpin stack 58 86 IPR037275 -
Gso4g0623 187 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
Gso4g0623 187 SUPERFAMILY RING/U-box 92 140 - -
Gso4g0623 187 ProSiteProfiles Zinc finger CTCHY-type profile. 26 92 IPR017921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0623 Gso-Chr4 6063594 6066689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0623 63 184 C2H2 Transcription Factor Family AT3G18290 39.850 9.29e-22 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0623 K10144 - gmx:100794082 361.303