Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0621 ATGCACGTCAAATCGGCGCAGTCATCGTTCCGGGATCGGACACAGGAATTCCACAGCATCACAGAGAGGTTGAAGAAGTCCGGATCAGGGCCCAATGGGCCCAGTAGTAGCAGCACTTCTTCCAGATCGGAGGAACAGCGATCCGCGATCGCGAATCAATCGGAGTTCAATAGAAGGGCCTCCAAAATCGGCTACGGGATTCACCAAACGTCTCAGAAGCTCGCCAAACTCGCCAAATTAGCGAAAAGGACTTCGGTTTTTGATGACCCTACTATGGAAATCCAAGAGCTTACGGGGGTTATTAAGCAGGATATCACTGCTCTGAACTCTGCTGTTGTGGATCTTCAGTTGGTGTGTAGCTCTAGGAATGAGACTGGAAATGTTTCTGCCGATACCTCTAGCCATTCGAGCACGGTGGTCGATGACTTGAAGACACGGTTGATGAGCACCACCAAAGAGTTTAAGGATGTTTTGACCATGAGAACTGAGAATATGAAAGTGCATGAGAATAGAAGACAGTTGTTTTCGTCTTCTGCTTCTAAGGATTCTGCGAATCCTTTTATTCGGCAACGGCCGTTGGCTGCAAGGGCGGCTGCTAGTACTTCTAGTGCCCCTGCTCTTCCCTGGGCTAATGGGTCACCATCTTCATCTCAGGCGTTTCCCAAGAAGCAAGTGGATGGGGAGAGTCAACCATTGTTGCAACAGCAACAGCAGCAGCAGGAGGTAGTTCCATTGCAAGATAGTTACATGCAAAGCAGAGCTGAAGCACTTCAGAATGTTGAGTCCACTATTCATGAGCTTAGCAACATTTTCAATCAGCTAGCAACACTTGTTTCCCAACAAGGAGAGATTGCCATCAGGATTGATGAAAACATGGATGATACATTGGCAAACGTAGAGGGAGCACAGGGGGCTTTGTTGAAGTATCTGAACAGCATATCTTCTAATCGGTGGTTGATGATCAAAATTTTCTTTGTATTAATATTTTTCCTTATGGTTTTCTTATTTTTTGTGGCATAG 1020 0.4637 MHVKSAQSSFRDRTQEFHSITERLKKSGSGPNGPSSSSTSSRSEEQRSAIANQSEFNRRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTGVIKQDITALNSAVVDLQLVCSSRNETGNVSADTSSHSSTVVDDLKTRLMSTTKEFKDVLTMRTENMKVHENRRQLFSSSASKDSANPFIRQRPLAARAAASTSSAPALPWANGSPSSSQAFPKKQVDGESQPLLQQQQQQQEVVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0621 339 SMART tSNARE_6 242 309 IPR000727 -
Gso4g0621 339 PANTHER SYNTAXIN-32-LIKE 2 338 - -
Gso4g0621 339 Gene3D - 49 302 - -
Gso4g0621 339 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 26 IPR021538 -
Gso4g0621 339 MobiDBLite consensus disorder prediction 1 23 - -
Gso4g0621 339 MobiDBLite consensus disorder prediction 1 55 - -
Gso4g0621 339 ProSitePatterns Syntaxin / epimorphin family signature. 253 292 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gso4g0621 339 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 247 309 IPR000727 -
Gso4g0621 339 PANTHER SYNTAXIN 2 338 IPR045242 -
Gso4g0621 339 MobiDBLite consensus disorder prediction 25 55 - -
Gso4g0621 339 SUPERFAMILY t-snare proteins 53 302 IPR010989 GO:0016020|GO:0016192
Gso4g0621 339 Pfam SNARE domain 283 335 IPR000727 -
Gso4g0621 339 CDD SNARE_syntaxin5 250 328 - -
Gso4g0621 339 MobiDBLite consensus disorder prediction 204 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0621 Gso-Chr4 6042299 6046766 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0621 1 339 SNARE and Associated Proteins AT3G24350 66.667 2.72e-151 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0621 K08490 - gmx:100778493 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0621 4 6042299 6046766 Gso6g0621 6 5754258 5757319 GST