Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0620 ATGCACACCAAATCGGCGCAGTCATCGTTTCGGGACCGGACGCACGAATTCCAGAGCATTGCGGAGAGGTTGAAGAAGACAGGATCAGCGCCAAATGGACAAAGCAGCAGCTCATCCAGATCGGAGGAACAGCGATCGGCGATTGCAAATCAATCAGAGTTCAACAGAAGAGCTTCCAAGATCGGCTTGGGGATTCACCAAACGTCTCAGAAGCTCGCCAAGCTCGCCAAGTTGGCGAAAAGGACTTCGGTTTTTGATGACCCTACTATGGAAATCCAAGAGCTTACGGGGGTTATTAAGCAAGATATCACTGCTCTAAACTCTGCGGTTGTGGATCTTCAGTTACTCTGCAACTCTAGGAACGAGAGTGGGAACGCTTCTACCGACACGACTAGCCATTCAACCACGGTGGTTGATGACCTGAAGACAAGGTTGATGAGCACCACTAAAGAGTTTAAGGATGTTCTCACCATGCGAACTGAGAACTTGAAAGTGCATGAGAATAGAAGGCAGCTGTTTTCGGCCAATGGTTCTAAGGACTCTGCAAATCCTTTTGTCCGGCAACGGCCGTTGGCTACAAGGTCGGCTGCTAATACTTCTAATGCCCCCGCTCCACCATGGGCTACCGGGTCATCTTCATCTCAGTTGTTTCCTAAGAAGCAGGTAGATGGGGAGAGTCAACCATTGCTGCAACAGCAGCAGCAGCAGCAGCAAGAGGTAGTTCCCTTGCAAGACAGTTACATGCAAAGCAGAGCTGAAGCTCTTCAGAATGTTGAGTCCACCATTCATGAGCTCAGCAACATCTTTAATCAACTAGCAACTCTTGTTTCCCAACAAGGAGAGATTGCCATCAGGATCGATGAAAATATGGATGATACACTGGCAAATGTAGAGGGGGCGCAAGGGGCTTTGTTGAAGTATCTGAACAGCATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTATTAATATTTTTTCTTATGGTTTTCTTATTTTTTGTGGCATAG 1014 0.4704 MHTKSAQSSFRDRTHEFQSIAERLKKTGSAPNGQSSSSSRSEEQRSAIANQSEFNRRASKIGLGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTGVIKQDITALNSAVVDLQLLCNSRNESGNASTDTTSHSTTVVDDLKTRLMSTTKEFKDVLTMRTENLKVHENRRQLFSANGSKDSANPFVRQRPLATRSAANTSNAPAPPWATGSSSSQLFPKKQVDGESQPLLQQQQQQQQEVVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0620 337 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 27 IPR021538 -
Gso4g0620 337 MobiDBLite consensus disorder prediction 194 235 - -
Gso4g0620 337 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 245 307 IPR000727 -
Gso4g0620 337 MobiDBLite consensus disorder prediction 1 48 - -
Gso4g0620 337 PANTHER SYNTAXIN 2 336 IPR045242 -
Gso4g0620 337 Gene3D - 48 300 - -
Gso4g0620 337 CDD SNARE_syntaxin5 248 326 - -
Gso4g0620 337 ProSitePatterns Syntaxin / epimorphin family signature. 251 290 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gso4g0620 337 MobiDBLite consensus disorder prediction 1 22 - -
Gso4g0620 337 PANTHER SYNTAXIN-32-LIKE 2 336 - -
Gso4g0620 337 SMART tSNARE_6 240 307 IPR000727 -
Gso4g0620 337 SUPERFAMILY t-snare proteins 51 300 IPR010989 GO:0016020|GO:0016192
Gso4g0620 337 MobiDBLite consensus disorder prediction 28 48 - -
Gso4g0620 337 Pfam SNARE domain 281 333 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0620 Gso-Chr4 6033624 6037683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0620 1 337 SNARE and Associated Proteins AT3G24350 65.289 7.28e-148 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0620 K08490 - gmx:100777961 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0620 4 6033624 6037683 Gso6g0620 6 5749083 5753111 GST