Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0614 ATGGCGCGCCCTACTCATCATGTCATTGACATCACGGGGAGTTCCCGACCTTCCACTTCGTCTTCTTCCACGCCCCATGATAGGCTTGCCAATGATGTGGATTTTGGTGCCTTGAATTCTAGGACTAGAAGGCGAGGGGATACTACGCGTAGTAGGCAGCATAGGAGTCCTTTGAATTCGGGTTTGTGGATATGTGTTGAGTTAGTGATCACAGTGAGCCAGATTGTTGCATCGGTTGTTGTTCTGTCTTTGTCAAAGCATGAGCACCCGCATGCCCCGTTGATTGCTTGGATTGTTGGGTATGCGTCCGGTTGTGTTGCTACCCTCCCTTTGCTATATTGGCGGTATTATCATAATCGTGGTGTTCGGGAGCAAGAGTCGTCTCAGGCCTCTCCGAGGAGTAATGATCCTTCAGGTACACTTCTTTCCGATTCAACGACCAATGGAGGGGAAGATGCTCCGGCATCTTCCAGAACTAGAAGCAATCAAGAGTCGTGGTTGATGAATGCAAGATTGAAGCTACTTGTGGAATACTTCAAAATTGCTGTAGATTGCTTTTTTGCTATATGGTTTGTTGTTGGAAATGTATGGATTTTTGGAGGACATTCATCTGCTGATCAAGCACCTAACTTATACAGGTTATGTGTAGTGTTTCTTACTTTTAGCTGCATCGGTTATGCTATGCCCTTCATTCTCTGTGCAACAATTTGCTGCTGCCTGCCTTGTATAATTTCCATCCTTGGAGTTAGAGAGGATATGGCACAAACCCGAGGTGCATCCTCTGAATCAATTAATGCTCTGCCGACTTATAAGTTCAAAATGAAGAGAAATAAAAGCAAAGGGGAAAGCAACTCAGCTGTTGGTGAAGGTGGAGTTGTGGCTGCAGGAACTGAAAAGGAACGTATGATCTCTGGAGAAGATGCAGCTTGCTGCATCTGCCTGGCTAAGTATGAAAATAACGATGAGCTGAGAGAATTGCCTTGTTCTCACCTATTTCATAAAGATTGTGTCGACAAGTGGTTGAAGATAAATGCTTTATGCCCCCTTTGCAAGAGTGAGGTTAGTGAGAACGTAAGAGGATCAGTCTCTGGGGTAGATGCCAACCAACATGAGGGTGAAAGCAGGGTTGAGAATGGCCTCACCAACACCTCATCGTAA 1158 0.4551 MARPTHHVIDITGSSRPSTSSSSTPHDRLANDVDFGALNSRTRRRGDTTRSRQHRSPLNSGLWICVELVITVSQIVASVVVLSLSKHEHPHAPLIAWIVGYASGCVATLPLLYWRYYHNRGVREQESSQASPRSNDPSGTLLSDSTTNGGEDAPASSRTRSNQESWLMNARLKLLVEYFKIAVDCFFAIWFVVGNVWIFGGHSSADQAPNLYRLCVVFLTFSCIGYAMPFILCATICCCLPCIISILGVREDMAQTRGASSESINALPTYKFKMKRNKSKGESNSAVGEGGVVAAGTEKERMISGEDAACCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVSENVRGSVSGVDANQHEGESRVENGLTNTSS* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0614 385 Pfam Ring finger domain 309 351 IPR001841 -
Gso4g0614 385 MobiDBLite consensus disorder prediction 125 160 - -
Gso4g0614 385 CDD RING-H2_RNF111_like 310 351 - -
Gso4g0614 385 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 39 377 - -
Gso4g0614 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 361 IPR013083 -
Gso4g0614 385 ProSiteProfiles Zinc finger RING-type profile. 310 351 IPR001841 -
Gso4g0614 385 SMART ring_2 310 350 IPR001841 -
Gso4g0614 385 MobiDBLite consensus disorder prediction 362 385 - -
Gso4g0614 385 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 39 377 - -
Gso4g0614 385 MobiDBLite consensus disorder prediction 1 55 - -
Gso4g0614 385 SUPERFAMILY RING/U-box 302 357 - -
Gso4g0614 385 MobiDBLite consensus disorder prediction 11 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0614 Gso-Chr4 5953167 5957161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0614 44 361 C3H Transcription Factor Family AT1G80400 58.642 4.06e-140 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0614 - - gmx:100775815 743.036