Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0612 ATGGATAAAGTAAATAGAGTTTGTGCCAAAGATGAAGAGCGTCCACTCCGAATCACCAGAGCAAGAGCTAGAGCCTTGAGAGGGATTACTCCCTACTCAAGACCCTCCTTAAAAAATGAGCAGAAAAACGTGCTTCGAGCTAATTCCAAAAGAGCAGCAAGTTCTGGAAACAAAACTTTTGCGGTTGTTCCTGCTGTTGTCCAGCAAAAGGGAAGGGCAGTGCTTTCAGATATATCAAACATGTGTGCAAAACCACATGATAAGTGTACTAAGGCATCAAAATTTCAGGCCAAAGGAGTTTGTACAAAGAAAAACACCAAGCTTGCAGCCTCAAGTGTTTCCACTGACGTTTCATCCTCACATGACGATGTTAGAGCAAAGTTAGCTGAAGAATTATCCACAATAAAGATGGTTGAATCAAATGACACCTTAAGAGAAGGTGTAACAGCAGACACCTCACTTTCAATGCAAAACTCTGTGAAATCTGATGAACTCCGGAACTCTCCAAACAAAGACATAGATATAATTTGTGAGAAGCTGGGAGCCTCAGACTCCCTGACTATTGTGGACATTGATTCAGAGTTAAAGGATCCTCAACTGTGGAGTTTTTATGCCCCTGACATATACAGCAATATTCGAGTCACAGAGCTTCAAAGGAAACCATTGACCAACTACATGGACAAGTTGCAGAAAGATATTAATCCAAGCATGCGTGGAATTCTGGTTGATTGGCTTGTGGAGGTTTCTGAGGAATACAAGTTGGTTCCAGACACTCTTTACCTGACCGTGAACCTCATTGATCGGTATCTCTCAACAAGACTCATTCAGAAGCAAAAGCTCCAGTTGCTCGGTGTTACTTGCATGTTGATTGCATCAAAATATGAAGAGATGTGTGCACCTCGAGTGGAGGAATTTTGCTTCATCACAGATAATACATACACAAAAGAAGAGGTATTGAAAATGGAGAGAGAAGTACTGAATCTTGTGCATTTTCAGTTATCTGTCCCCACAATCAAAACTTTTCTCAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGCTCCTTATGTTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTTGCTCTTGTTGAATGCAGCTTCTTCCAGTTTCTACCTTCCCTTATAGCTGCATCTGCTGTGTTCCTTGCCAAATGGACCCTGAATGAGTCAGAACATCCATGGAATCCAACTCTGGAGCACTATACAAAATACAAAGCTTCAGACCTCAAAACTGTTGTTCTTGCACTGCAAGATCTGCAACTTAATACCAAAGGATGCTTCCTGAATGCTGTCCGCGAGAAGTATAAGCAACAGAAGTTCAATTGTGTGGCAAACTTGTCTCCAAAATCGGTGCAGTCACTCTTCCAGAACCAAGTGTCTCTTTGTTTTGCAAAGGGAAAACTGTTGCGGGATGATACAGTTCAAAGAGTGAGTTGA 1467 0.4172 MDKVNRVCAKDEERPLRITRARARALRGITPYSRPSLKNEQKNVLRANSKRAASSGNKTFAVVPAVVQQKGRAVLSDISNMCAKPHDKCTKASKFQAKGVCTKKNTKLAASSVSTDVSSSHDDVRAKLAEELSTIKMVESNDTLREGVTADTSLSMQNSVKSDELRNSPNKDIDIICEKLGASDSLTIVDIDSELKDPQLWSFYAPDIYSNIRVTELQRKPLTNYMDKLQKDINPSMRGILVDWLVEVSEEYKLVPDTLYLTVNLIDRYLSTRLIQKQKLQLLGVTCMLIASKYEEMCAPRVEEFCFITDNTYTKEEVLKMEREVLNLVHFQLSVPTIKTFLRRFIQAAQSSYKAPYVELEFLANYLAELALVECSFFQFLPSLIAASAVFLAKWTLNESEHPWNPTLEHYTKYKASDLKTVVLALQDLQLNTKGCFLNAVREKYKQQKFNCVANLSPKSVQSLFQNQVSLCFAKGKLLRDDTVQRVS* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0612 488 PANTHER CYCLINS 50 465 IPR039361 -
Gso4g0612 488 PANTHER CYCLIN-A2-4 50 465 - -
Gso4g0612 488 Gene3D - 207 455 - -
Gso4g0612 488 Pfam Cyclin, C-terminal domain 336 458 IPR004367 -
Gso4g0612 488 CDD CYCLIN 237 326 IPR013763 -
Gso4g0612 488 Gene3D - 221 334 - -
Gso4g0612 488 SUPERFAMILY Cyclin-like 196 333 IPR036915 -
Gso4g0612 488 SMART cyclin_7 340 428 IPR013763 -
Gso4g0612 488 SMART cyclin_7 243 327 IPR013763 -
Gso4g0612 488 PIRSF Cyclin_A_B_D_E 31 470 IPR039361 -
Gso4g0612 488 Pfam Cyclin, N-terminal domain 207 333 IPR006671 -
Gso4g0612 488 SUPERFAMILY Cyclin-like 335 458 IPR036915 -
Gso4g0612 488 CDD CYCLIN 334 426 IPR013763 -
Gso4g0612 488 ProSitePatterns Cyclins signature. 238 269 IPR006671 -
Gso4g0612 488 SMART Cyclin_C_2 336 459 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0612 Gso-Chr4 5924018 5935265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0612 16 465 Core Cell Cycle Gene Families AT5G25380 54.102 3.80e-155 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0612 K06627 - gmx:547780 902.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0612 4 5924018 5935265 Gso6g0610 6 5672315 5678113 GST
Gso14g1045 14 17589904 17596657 Gso4g0612 4 5924018 5935265 PCT
Gso17g1735 17 33537705 33544796 Gso4g0612 4 5924018 5935265 PCT
Gso4g0612 4 5924018 5935265 Gso14g1045 14 17589904 17596657 PCT
Gso4g0612 4 5924018 5935265 Gso17g1735 17 33537705 33544796 PCT