Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0611 ATGTCGACCTCGACGAACGTGGTAGTCCTGGACAACGGCGGCGGGCTGATCAAGGCGGGCATCGGCGGCGAGCGCGACCCCTCCGCCATAGTCCCGAACTGCCTCTACCGCCCCCCGTCGTCGAAGAAGTGGCTCCACCTCCACTCCGGCGACGAGGACCTCACCTCCGCCGCCGTGCGCCGCCCCATGGACCGCGGCTACCTCATAAACCCCGACCTCCAGCGCGAAATCTGGTCCCACCTCTTCTCTTCCGTCCTCCACATAAACCCTTCCCAGTCCTCGCTCCTCCTCACGGAGCCTCTCTTCACTCCCCCCTCCATCCAGCGCTCGGTGGACGAGCTCGTCTTCGAGGACTTCAACTTCCGGGCCCTGTACGTGGCCCACTCCCCCTCCCTCGTCCACCTCCACGAGGCCAGCCGCAACAACGCCAACGGGCTCCTCTCCAAGGCCCAGTGCAGCCTCGTCCTCGACGCCGGGTTCTCCTTCACCCACGCCTCCCCCGTCTTCCACAACTTCGCCCTCAACTACGCCGTCAAGAGGATCGACCTCGGCGGCAAGGCCCTCACCAACTACCTCAAGGAGCTCGTCTCCTTCCGCTCCGTTAATGTCATGGAAGAGACCTTCATCATCGACGACGTCAAGGAGAAACTCTGCTTTGTCTCACTCGACGTCAACCGCGACCTCACCATCGCCAGGAAGAGTGGGAAAGAGAATCTGTTCAGGTGCACCTACGTGCTTCCGGATGGTGTCACGTACACAAAGGGGTTTGTTAAGTATCCAGATCAGGCGCAGCGATATCTTGCATTGAGGGAGGGTGGCCTTCATTCTTCATCACCAGTGCAAGCGCAGGAGGATGTGAATTTCACGGAAATTGCCGAGCACCCAGAGAACAGGAAGAGAGTTGATTTGACAAAAAATGAATTTGACTTGACAAATGAACGGTTTCTTGTGCCAGAGATGATCTTCCGTCCTGCTGATTTGGGAATGAACCAGGCTGGGCTAGCAGAATGCATTGTACGTGCTGTTAATGCGTGCCATCCACATCTCCGCCCTGTTCTCTATGAAAGCATCATTTTAACTGGTGGAAGCACCTTATTTCCTCAGTTTGCCGAGAGACTAGAGAAGGAGCTTCGGCCTCTAGTTCCTGATGACTATCGTGTGAAGATAACGACTCAAGAAGATCCCATACTAGGTGTTTGGCGTGGAGGTTCACTGTTGGCATCAAGTCCGGATTTTGAAGCTATGTGTGTGACCAAGTCTGAGTATGAGGAGCTTGGTTCTGCTAGATGTCGCAAGAGATTCTTTCATTAA 1311 0.5591 MSTSTNVVVLDNGGGLIKAGIGGERDPSAIVPNCLYRPPSSKKWLHLHSGDEDLTSAAVRRPMDRGYLINPDLQREIWSHLFSSVLHINPSQSSLLLTEPLFTPPSIQRSVDELVFEDFNFRALYVAHSPSLVHLHEASRNNANGLLSKAQCSLVLDAGFSFTHASPVFHNFALNYAVKRIDLGGKALTNYLKELVSFRSVNVMEETFIIDDVKEKLCFVSLDVNRDLTIARKSGKENLFRCTYVLPDGVTYTKGFVKYPDQAQRYLALREGGLHSSSPVQAQEDVNFTEIAEHPENRKRVDLTKNEFDLTNERFLVPEMIFRPADLGMNQAGLAECIVRAVNACHPHLRPVLYESIILTGGSTLFPQFAERLEKELRPLVPDDYRVKITTQEDPILGVWRGGSLLASSPDFEAMCVTKSEYEELGSARCRKRFFH* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0611 436 PANTHER ACTIN 8 432 IPR004000 -
Gso4g0611 436 CDD NBD_sugar-kinase_HSP70_actin 8 195 - -
Gso4g0611 436 PANTHER ACTIN-RELATED PROTEIN 6 8 432 IPR030054 GO:0005634|GO:0006338
Gso4g0611 436 Gene3D Actin; Chain A, domain 4 191 339 - -
Gso4g0611 436 SUPERFAMILY Actin-like ATPase domain 151 435 IPR043129 -
Gso4g0611 436 Pfam Actin 4 435 IPR004000 -
Gso4g0611 436 Gene3D - 130 406 - -
Gso4g0611 436 SMART actin_3 5 435 IPR004000 -
Gso4g0611 436 Gene3D - 8 427 - -
Gso4g0611 436 SUPERFAMILY Actin-like ATPase domain 4 134 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0611 Gso-Chr4 5915527 5921472 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0611 8 435 Cytoskeleton Gene Families AT5G59370 27.169 3.47e-53 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0611 K11662 - gmx:100819827 874.774