Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0610 ATGGCTGTGCTGCTGAGAATGGCTCAGCCTCACAATGGCAACACCAATAGCACTGCGAACCAGCAATTGGTCCTTCATGACTTTCTGGGTATGAAGCCCGCCGCCGATTCCCCCCAAACCGCCGATGTTAGGTTTCCGGAGCCGTCCGCCTCCGCCTCCTCCGCCGGAGGACGCGGCCCCTTCTCCGCCACCTCCGACATCGCTTCCGAGAAACAGATAGGAAATCATCTCGAGGGAGTTCCATTCTATGGCCCGAGGAGTGATTTTTCTGGCACTGAGATAAGCAACAGATTAGTGGGAAACAAGAGAAGTAATTCTGATTCCACTTTTATGGGTTCCTCCAGAGATGCCTTGCAAATGGTCCCTGATTCCTTTCAAAACTCACATTTGATGAAGGTTCTCCGCAGTGCGGCTGAAGGAGAAAGGTCACAAAGGCCCAATGACGATGAAGTGTTACTTGGTATGCAGTCAATGAAGCCATCCTCTTCTCAGATATTTCAGCCTCCCACCAGCACTAAGATTGATGCCAATAAATGGGAACGATCTATTCTCATGAATGTTGGCCCTTCCATGCAGCATCCACTGCGTGGGGCGCAATTGGCACCTTTTGTGCACCAAATGGCTTCAAGCAAGATTAGGGATTCCAACGCTGGCCCTTCATTCATCTCTCAGTCAGCTGCTGATGAAGGATCTAGAACGGGAATCAAGGGCCCTGGAATTTTAAGTTCTATAAACGCAGCTGCTACAGCCACTGAGAAAACTATTCCATCTGCTGTGATGCTTGGTGGCAGCAGGCCAAAGCCTGGAACTAATATAATAGAATCATCCACACCTCCAAGTCAACATGGGTTAACTTCTGCCTGCCGCCAGATGACTATTTTTTATGGAGGCCAAGCTCATGTTTTTGATGATGTCCACCCTCATAAGGCAGATGTTATAATGGCTTTGGCTGGGTCAAATGGAGGATCTTGGTCCACTGCATTCTCTCCTAAATCTGTTGTAAAGATGGTTAGTGATGGTAACTTGCATGGTGGAGAAAATGAAACAGGTCTAGTTAGTAATGTGGCATTCCCACAGGAGCTTCATGGGAAATTGTCTATTACTGGCAGTTCTAGCCATGCCATCGGGCTTGGTGATCGAGTAACTACTCCAGCAGGGGCACACCAAGGAAGCGTTTTTGCAAAAGATACAAGAACTTTGGTCCAACCACCAGATCCCAGTTCTGAAGACAAAAGACCACAGTGA 1245 0.4843 MAVLLRMAQPHNGNTNSTANQQLVLHDFLGMKPAADSPQTADVRFPEPSASASSAGGRGPFSATSDIASEKQIGNHLEGVPFYGPRSDFSGTEISNRLVGNKRSNSDSTFMGSSRDALQMVPDSFQNSHLMKVLRSAAEGERSQRPNDDEVLLGMQSMKPSSSQIFQPPTSTKIDANKWERSILMNVGPSMQHPLRGAQLAPFVHQMASSKIRDSNAGPSFISQSAADEGSRTGIKGPGILSSINAAATATEKTIPSAVMLGGSRPKPGTNIIESSTPPSQHGLTSACRQMTIFYGGQAHVFDDVHPHKADVIMALAGSNGGSWSTAFSPKSVVKMVSDGNLHGGENETGLVSNVAFPQELHGKLSITGSSSHAIGLGDRVTTPAGAHQGSVFAKDTRTLVQPPDPSSEDKRPQ* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0610 414 Pfam tify domain 289 318 IPR010399 -
Gso4g0610 414 MobiDBLite consensus disorder prediction 35 64 - -
Gso4g0610 414 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 52 412 IPR040390 -
Gso4g0610 414 SMART tify_2 284 319 IPR010399 -
Gso4g0610 414 PANTHER PROTEIN TIFY 8 52 412 - -
Gso4g0610 414 ProSiteProfiles Tify domain profile. 284 319 IPR010399 -
Gso4g0610 414 MobiDBLite consensus disorder prediction 378 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0610 Gso-Chr4 5903856 5910680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0610 18 317 Tify Gene Family AT4G32570 41.401 4.34e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gso4g0610 tify 2.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0610 - - gmx:100819293 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0610 4 5903856 5910680 Gso6g0608 6 5653424 5660207 GST