Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0605 ATGTCTCAGACCAACTGGGAAGCTGACAAGATGTTAGATGTTTACATCCATGATTATCTTGTTAAGAGGGACTTGAAGGCTTCTGCTCAGGCCTTTCAAGCTGAAGGAAAAGTATCCTCGGACCCTGTTGCTATTGATGCCCCGGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGATATATTTATTGCAAGGACGAATGAGAAGCACTCAGAGGTTGCTGCTTCGTATATTGAGACACAATTAATAAAGGCAAGGGAGCAACAACAGCAGCAGAACCAGCAGCAGCCACAACCCCAGCAGTCACAGCATCAACAACAGCAGCAGCAACAACACATGCAGATGCAACAGCTCCTGTTGCAGAGAGCACAGCAACAGCAGCAGCAACAACAACAACAACAGCAGCAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAGCAGCAACAACAACAACAACAACAGCCACAATCGCAGCAACAACAGTCACAACCGCAACAACAGCAAAGTAGGGATAGGGCTCATCTTTTAAATGGTAGTGCAAATGGGTTAGTCGGAAACCCTGGAACTGCAAATGCACTAGCAACAAAAATGTATGAGGAAAGATTAAAACTTCCCCTTCAAAGGGACCCTTTGGATGATGCAGCAATGAAGCAAAGATTTGGTGAAAACATGGGCCAACTCTTGGACCCAAATCATGCATCGATATTAAAGTCAGCTGCAACTCCTGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTGCTGGTGGGATGTCTCCACAAGTTCAAGCACGTACTCAACAATTACCAGGGTCTACTCTGGATATTAAGGGTGAGATTAGTCCTGTTTTAAATCCCAGAGCTGCTGGTCCTGAAGGATCATTGATGGGAATGCCTGGATCAAATCAAGGTAGCAATAATTTGACTTTGAAAGGGTGGCCTCTCACAGGTTTGGAGCAACTGCGCTCTGGTCTACTCCAGCAACAAAAACCTTTCATGCAGGCTCCTCAACCTTTTCATCAACTCCAAATGTTGACACCACAGCATCAGCAACAGCTTATGCTGGCGCAACAAAATCTGGCATCACCATCTGCCAGTGAAGAAAGTAGAAGATTGAGAATGCTATTGAATAATAGGAATATTGGTCTAAATAAGGACAGTCTTTCAAATCCTGTTGGTGACGTGGTATCAAATGTCGGATCCCCTCTTCAAGGTGGTGGCCCTCCTTTTCCTCGTGGAGATACAGATATGCTAATGAAGTTGAAGCTGGCTCAGTTACAGCAACAGCAACAACAGTCAAGTACTAATGCACAGCAGCAGCAGCTTCAACAACATGTCCTTTCAAACCAGCAATCTCAGACTTCTAATCATAGCATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACTGTGGATGGTAGCATGTCAAACTCATTTAGAGGAAATGACCAGGTTTCAAAAAACCAGATTGTGAGAAAGAGAAAGCAGCCTGGATCCTCATCAGGTCCTGCCAATAGTTCAGGAACGGCAAATACAACAGGTCCATCACCAAGTTCAGCACCCTCAACTCCGTCGACTCATACGCCTGGAGATGTGATATCAATGCCTGCCTTGCCGCATAGTGGTAGTTCTTCAAAGCCTCTAATGATGTTTAGCACAGATGGTACTGGAACCCTTACGTCACCTTCTAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTAGATGAAAATGTCGAGTCTTTTTTGTCCCATGATGACACAGACCCTAGAGATACTGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGGGCAAGCACAAGCAAAGTTGCCTGTTGCCATTTCTCATCTGATGGGAAGTTACTAGCAAGTGGTGGCCATGACAAAAGGGTTGTTTTATGGTACACAGATTCTCTAAAACAAAAGGCTACTCTTGAAGAGCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGTTATTCACTTCGTACTTTCACGGGACATTCAACATCTGTTATGTCACTAGATTTTCATCCAAATAAAGATGACCTCATCTGCTCTTGTGATGGTGATGGTGAGATACGGTATTGGAGCATAAACAATGGCAGTTGTGCTAGAGTGTCCAAGGGTGGCACCACACAGATGAGATTTCAGCCTCGTCTCGGGAGGTACCTTGCTGCAGCGGCAGAGAATATTGTGTCTATATTTGATGTGGAGACACAAGCGTGTCGATATTCACTAAAGGGACACACAAAACCAGTGGATTGTGTTTGTTGGGATCCTTCTGGGGAGTTGCTGGCATCTGTGAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCAGGGAGTGAAGGGGAATGTGTTCATGAACTTAGCTGTAATGGCAATAAGTTTCATGCATCTGTTTTCCACCCAACGTACCCTTCATTGCTGGTCATTGGCTGTTACCAGTCATTGGAGCTGTGGAATATGAGCGAGAACAAGACAATGACTCTGTCTGCTCATGATGGTCTCATTACTTCCTTGGCGGTTTCAACTGTAAATGGTTTGGTTGCTTCAGCCAGTCATGACAAGTTCCTCAAGCTCTGGAAGTGA 2739 0.4553 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQNQQQPQPQQSQHQQQQQQQHMQMQQLLLQRAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQSQQQQSQPQQQQSRDRAHLLNGSANGLVGNPGTANALATKMYEERLKLPLQRDPLDDAAMKQRFGENMGQLLDPNHASILKSAATPGQPSGQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPVLNPRAAGPEGSLMGMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQLMLAQQNLASPSASEESRRLRMLLNNRNIGLNKDSLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLMKLKLAQLQQQQQQSSTNAQQQQLQQHVLSNQQSQTSNHSMHQQDKVGGGGGSVTVDGSMSNSFRGNDQVSKNQIVRKRKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSDGKLLASGGHDKRVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTTQMRFQPRLGRYLAAAAENIVSIFDVETQACRYSLKGHTKPVDCVCWDPSGELLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHASVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSAHDGLITSLAVSTVNGLVASASHDKFLKLWK* 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0605 912 Gene3D - 761 912 IPR015943 GO:0005515
Gso4g0605 912 MobiDBLite consensus disorder prediction 383 398 - -
Gso4g0605 912 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 880 912 - -
Gso4g0605 912 ProSiteProfiles Trp-Asp (WD) repeats profile. 670 705 IPR001680 GO:0005515
Gso4g0605 912 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 628 659 - -
Gso4g0605 912 CDD WD40 628 912 - -
Gso4g0605 912 Pfam LisH 10 36 IPR006594 GO:0005515
Gso4g0605 912 Pfam WD domain, G-beta repeat 630 659 IPR001680 GO:0005515
Gso4g0605 912 Pfam WD domain, G-beta repeat 667 702 IPR001680 GO:0005515
Gso4g0605 912 Pfam WD domain, G-beta repeat 791 825 IPR001680 GO:0005515
Gso4g0605 912 Pfam WD domain, G-beta repeat 709 746 IPR001680 GO:0005515
Gso4g0605 912 Pfam WD domain, G-beta repeat 875 912 IPR001680 GO:0005515
Gso4g0605 912 MobiDBLite consensus disorder prediction 423 463 - -
Gso4g0605 912 Gene3D - 604 760 IPR015943 GO:0005515
Gso4g0605 912 ProSiteProfiles Trp-Asp (WD) repeats profile. 628 669 IPR001680 GO:0005515
Gso4g0605 912 MobiDBLite consensus disorder prediction 89 115 - -
Gso4g0605 912 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 912 IPR044716 GO:0003714
Gso4g0605 912 SUPERFAMILY WD40 repeat-like 626 912 IPR036322 GO:0005515
Gso4g0605 912 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 670 705 - -
Gso4g0605 912 SMART Lish 8 40 IPR006594 GO:0005515
Gso4g0605 912 MobiDBLite consensus disorder prediction 474 534 - -
Gso4g0605 912 Coils Coil 114 156 - -
Gso4g0605 912 SMART WD40_4 621 660 IPR001680 GO:0005515
Gso4g0605 912 SMART WD40_4 663 702 IPR001680 GO:0005515
Gso4g0605 912 SMART WD40_4 749 785 IPR001680 GO:0005515
Gso4g0605 912 SMART WD40_4 788 826 IPR001680 GO:0005515
Gso4g0605 912 SMART WD40_4 706 746 IPR001680 GO:0005515
Gso4g0605 912 SMART WD40_4 832 871 IPR001680 GO:0005515
Gso4g0605 912 SMART WD40_4 873 912 IPR001680 GO:0005515
Gso4g0605 912 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 912 - -
Gso4g0605 912 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Gso4g0605 912 ProSiteProfiles Trp-Asp (WD) repeats profile. 713 755 IPR001680 GO:0005515
Gso4g0605 912 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 713 751 - -
Gso4g0605 912 ProSiteProfiles Trp-Asp (WD) repeats profile. 795 835 IPR001680 GO:0005515
Gso4g0605 912 Coils Coil 424 444 - -
Gso4g0605 912 ProSitePatterns Trp-Asp (WD) repeats signature. 689 703 IPR019775 -
Gso4g0605 912 MobiDBLite consensus disorder prediction 383 554 - -
Gso4g0605 912 ProSiteProfiles Trp-Asp (WD) repeats profile. 880 912 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0605 Gso-Chr4 5844319 5854097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0605 673 911 Miscellaneous Gene Families AT5G08390 23.265 9.00e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gso4g0605 WD40 0.0045 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0605 - - gmx:100816263 1378.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0605 4 5844319 5854097 Gso6g0605 6 5593181 5606284 GST
Gso14g1042 14 17291803 17307809 Gso4g0605 4 5844319 5854097 PCT
Gso17g1744 17 33758477 33769871 Gso4g0605 4 5844319 5854097 PCT
Gso4g0605 4 5844319 5854097 Gso14g1042 14 17291803 17307809 PCT
Gso4g0605 4 5844319 5854097 Gso17g1744 17 33758477 33769871 PCT