Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0601 ATGGAAAGTGGTGAACTGAGAGTGGCAAGTGCACGCATAGGGAGCTCCAGCGTGTGGAGGAGCAGTGGTGGCGTTGATGTGTTTTCAGGGTCTTCAAGAAGGGATGATGATGAACAAGAGCTTAAATGGGCTGCAATTGAGAAACTCCCCACTTATCTACGTATGACTAGGGGCATTCTCACCGAGGCTGAAGGCCAACCTACAGAGATTGATATAAACAAACTCTGTCCACTTCAGAGGAAGAACTTGGTGGAGAGGCTCGTCAAGATTGCAGAACAAGACAATGAGAAGTTCTTGTTCAAGTTAAGGGATCGCATTGATAGTGTTGGACTTGAAATTCCGGCGATTGAAGTCCGTTTTGAGCACTTGAATGTTGAGGCAGAAGCTCATGTGGGAAGCAGGGCACTACCTACAATCTTTAACTTCTGCATTAATTTGTTGGAGGGGTTCCTCAATTCTCTTCACCTTATTCCAAGTCGAAAGAAGCCATTCACAGTTCTTGATGATGTCAGTGGAATCATCAAGCCTAAAAGAATGTCACTGCTTTTAGGCCCTCCAAGCTCTGGAAAGACCACATTGTTGTTGGCACTAGCTGGAAGACTTGGTAAAGATCTAAAATTTTCGGGGCGAGTTTCGTATAATGGTCATGGGATGGAGGAATTTGTACCTCAGAGAACATCAGCTTACATAAGTCAAACTGATCTACACATAGGAGAAATGACAGTAAGAGAAACATTGGCCTTCTCTGCAAGGTGTCAAGGGATTGGAACCCGTAATGAGATGCTGGCGGAATTGTCAAGAAGAGAGAAGGCTGCAAACATTAAGCCAGATCCTGATCTTGATATTTATATGAAGGCAGCAGCACTAGAAGGCCAAGAAACCAATGTTGTTACAGATTATATAATGAAGATTTTGGGACTAGAAATTTGTGCTGATACCATGGTAGGGGATGACATGATTCGAGGTATTTCTGGCGGACAAAAGAAGAGAGTCACAACTGGTGAGATGCTAGTTGGACCAGCAAGAGCACTTCTCATGGATGAAATATCAACTGGTTTAGACAGTTCTACCACATTCCAAATGGTTAATTCTTTAAGACAATCTATCCACATTCTGAATGGAACAGCTGTGATCTCTCTTCTCCAGCCAGCACCAGAAACTTACGAGTTATTTGATGATATAATTCTCCTCTCAGATGGGCAAATTGTGTATCAGGGTCCAAGGGAAAATGTTCTCGAGTTCTTTGAATACATGGGGTTCAAATGTCCAGAGAGGAAAGGAGTAGCAGATTTTTTACAAGAAGTAACATCAAGAAAAGACCAAGAACAGTATTGGGCAAATAAAGATGAGCCATACTCCTTCGTCACTGTTAAAGAGTTTGCTGAAGCATTTCAGTCGTTTCACGTTGGTCGAAAACTCGGTGATGAACTTGCCACTCCATTTGACATGTCCAAAGGCCACCCTGCTGTGTTGACAAAAAACAAGTATGGTGTTTGCAAGAAAGAACTTCTGAAAGCCTGTGTGTCCAGAGAATTCTTACTTATGAAAAGGAATTCGTTTGTCTATATTTTCAAGATGTGGCAACTGATTTTAACGGGGTTCATAACAATGACATTGTTCCTGAGAACTGAGATGCACCGGGATACAGAAACTGATGGTGGGATCTATATGGGAGCACTGTTCTTCGTACTAATTGTGATTATGTTTAATGGATACTCCGAATTATCCATGTCCATCATGAAACTCCCAGTTTTCTATAAGCAAAGGGACCTTCTCTTTTTTCCTTGTTGGGCATACTCTCTGCCTACATGGATCCTTAAGATTCCTATCACCTTAGTGGAAGTTGGTATTTGGGTTGTGATGACTTACTATGTTATAGGATTTGATCCTAGTATTGAGAGGTTCATCAAGCAATACTTTCTACTTGTTTGTATCAACCAAATGGCATCAGGACTTTTTCGATTTATGGGGGCAGTTGGGAGGAACATCATTGTTGCAAACACAGTTGGGTCATTTGCTTTACTTGCAGTTATGGTCATGGGTGGATTTATCCTATCTAGAGTTGATGTGAAGAAGTGGTGGTTGTGGGGTTACTGGTTCTCGCCCATGATGTATGGACAAAATGCTCTAGCTGTGAATGAGTTCCTTGGAAAGAGTTGGTCACATGTTCCACCTAATTCAACAGAACCATTAGGAGTAAAGGTCTTGAAGTCACGTGGGATCTTCCCTGAAGCATACTGGTATTGGATTGGAGTTGGAGCTTCCATTGGATACATGTTACTGTTCAACTTCCTTTTCCCCTTAGCTTTACATTATCTTGACCCATTTGGTAAACCCCAAGCTCTAATATCCGAAGAGGCCTTAGCTGAGAGAAATGCTGGCAGAAACGAACACATCATTGAATTATCATCTAGAATCAAAGGCTCTTCTGATAGAGGGAATGAAAGTCGTAGAAATATGTCCTCCAGAACACTGTCAGCAAGAGTGGGTAGCATTGGTGCAAGTGAACACAACAAGAAACGAGGGATGGTTCTTCCTTTCACACCCCTTTCCATCACTTTTGATGAAATCAGATATTCGGTGGAGATGCCACAGGAAATGAAGAGCCAAGGCATTCTTGAAGATCGACTTGAACTGTTGAAGGGTGTTAATGGAGTCTTTAGGCCAGGAGTTCTTACAGCTCTAATGGGTGTAAGTGGGGCTGGTAAAACAACTCTAATGGATGTGTTATCTGGAAGAAAAACAGCAGGTTATGTTCAAGGGCAAATCACTATATCTGGGTACCCTAAAAAGCAAGAAACGTTTGCGCGCATAGCAGGATACTGTGAGCAGACTGATATCCACTCTCCCCATGTTACAGTCTATGAGTCTTTGGTTTATTCTGCATGGCTTCGGTTACCCCCTGAGGTTGATTCTGTCACCAGACAGATGTTCATTGAGGAAGTTATGGAGCTGGTAGAGCTGACTTCATTAAGAGAAGCCTTGGTGGGATTGCCTGGAGTGAATGGCCTCTCCACGGAGCAGCGCAAGAGGTTAACAATTGCAGTTGAACTTGTTGCCAATCCATCTATTATATTCATGGATGAACCTACCTCTGGCCTTGATGCCAGAGCTGCTGCTATAGTAATGAGAACAGTGAGGAATACAGTTGATACCGGACGAACTGTGGTCTGCACAATCCACCAGCCTAGCATTGATATATTTGATGCTTTTGATGAGCTACTTTTGTTGAAGCGTGGAGGTGAGGAAATATATGTGGGACCTTTAGGCCAGTGTTGTTCTCAACTGATCAATTACTTTGAGGGAATTAATGGGGTGCCAAAAATTAAAAAGGGCTATAATCCTGCTACTTGGATGTTGGAGGTTACTTCAGAAGCACAAGAAGCAGCTCTTGGACTTAACTTCGCTGAAATATACAAGAATTCTGACCTATATAGGAGAAACAAGGCCTTGATCAGGGAACTTAGCACACCTACAACAGGTTTCAAAGACTTGTACTTCCCCACAAAGTACTCACAGACTTTCATCACCCAATGCATGGCTTGCCTTTGGAAACAGCACCTATCATACTGGCGAAATCCCCCATATAGTGCAGTGAGACTTTTATTCACAACTATCATAGCCTTATTGTTTGGGACAATATTTTGGGATATTGGCTCCAAAAGGCAAAGAAAACAAGATCTATTTAATGCAATGGGATCCATGTATGCTGCAGTCCTCTTCATTGGGATACAAAATGCTACATCTGTGCAACCAGTTGTAGCCATTGAGAGAACAGTCTTCTATAGAGAAAGAGCTGCTGGAATGTACTCAGCTTTACCATATGCATTTGGACAGGTTGCTATTGAGATCCCATACATATTCATACAAACCCTCGTGTATGGAGTCATAGTGTATGCTATGATTGGGTTTGATTGGACGTTCAGCAAGTTCTTTTGGTATCTCTTCTTCATGTTCTTTACCTTTTTATACTTCACGTTTTATGGCATGATGGCTGTGGGTCTTACCCCGGATCACAACGTAGCTACTATAGTTTCCTTTGGGTTCTACATGATATGGAACCTCTTCTCAGGATTCGTCATTCCACGAACCAGAATGCCAGTGTGGTGGAGATGGTACTTTTGGATTTGTCCTGTGTCTTGGACCTTATATGGATTGGTTACTTCACAATTTGGTGACATAAAGGAACGTATAGATACTGGAGAGACTGTGGAAGAGTTTGTTAGGAGTTATTTTGGGTATAGAGATGACTTTGTAGGAGTAGCTGCAGCTGTGCTTGTTGGGTTTACACTGCTTTTTGGATTTACCTTTGCCTTCTCAATCAAGGCATTCAATTTCCAAAAGAGATGA 4350 0.4225 MESGELRVASARIGSSSVWRSSGGVDVFSGSSRRDDDEQELKWAAIEKLPTYLRMTRGILTEAEGQPTEIDINKLCPLQRKNLVERLVKIAEQDNEKFLFKLRDRIDSVGLEIPAIEVRFEHLNVEAEAHVGSRALPTIFNFCINLLEGFLNSLHLIPSRKKPFTVLDDVSGIIKPKRMSLLLGPPSSGKTTLLLALAGRLGKDLKFSGRVSYNGHGMEEFVPQRTSAYISQTDLHIGEMTVRETLAFSARCQGIGTRNEMLAELSRREKAANIKPDPDLDIYMKAAALEGQETNVVTDYIMKILGLEICADTMVGDDMIRGISGGQKKRVTTGEMLVGPARALLMDEISTGLDSSTTFQMVNSLRQSIHILNGTAVISLLQPAPETYELFDDIILLSDGQIVYQGPRENVLEFFEYMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTVKEFAEAFQSFHVGRKLGDELATPFDMSKGHPAVLTKNKYGVCKKELLKACVSREFLLMKRNSFVYIFKMWQLILTGFITMTLFLRTEMHRDTETDGGIYMGALFFVLIVIMFNGYSELSMSIMKLPVFYKQRDLLFFPCWAYSLPTWILKIPITLVEVGIWVVMTYYVIGFDPSIERFIKQYFLLVCINQMASGLFRFMGAVGRNIIVANTVGSFALLAVMVMGGFILSRVDVKKWWLWGYWFSPMMYGQNALAVNEFLGKSWSHVPPNSTEPLGVKVLKSRGIFPEAYWYWIGVGASIGYMLLFNFLFPLALHYLDPFGKPQALISEEALAERNAGRNEHIIELSSRIKGSSDRGNESRRNMSSRTLSARVGSIGASEHNKKRGMVLPFTPLSITFDEIRYSVEMPQEMKSQGILEDRLELLKGVNGVFRPGVLTALMGVSGAGKTTLMDVLSGRKTAGYVQGQITISGYPKKQETFARIAGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSVTRQMFIEEVMELVELTSLREALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKRGGEEIYVGPLGQCCSQLINYFEGINGVPKIKKGYNPATWMLEVTSEAQEAALGLNFAEIYKNSDLYRRNKALIRELSTPTTGFKDLYFPTKYSQTFITQCMACLWKQHLSYWRNPPYSAVRLLFTTIIALLFGTIFWDIGSKRQRKQDLFNAMGSMYAAVLFIGIQNATSVQPVVAIERTVFYRERAAGMYSALPYAFGQVAIEIPYIFIQTLVYGVIVYAMIGFDWTFSKFFWYLFFMFFTFLYFTFYGMMAVGLTPDHNVATIVSFGFYMIWNLFSGFVIPRTRMPVWWRWYFWICPVSWTLYGLVTSQFGDIKERIDTGETVEEFVRSYFGYRDDFVGVAAAVLVGFTLLFGFTFAFSIKAFNFQKR* 1450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0601 1449 SMART AAA_5 889 1081 IPR003593 -
Gso4g0601 1449 SMART AAA_5 176 408 IPR003593 -
Gso4g0601 1449 Pfam Plant PDR ABC transporter associated 720 783 IPR013581 -
Gso4g0601 1449 PANTHER CASSETTE TRANSPORTER, PUTATIVE-RELATED 10 1449 - -
Gso4g0601 1449 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 151 424 IPR003439 GO:0005524
Gso4g0601 1449 CDD ABCG_PDR_domain2 849 1087 IPR034003 -
Gso4g0601 1449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 876 1092 IPR027417 -
Gso4g0601 1449 Gene3D - 153 463 IPR027417 -
Gso4g0601 1449 PANTHER ATP-BINDING CASSETTE TRANSPORTER 10 1449 - -
Gso4g0601 1449 Pfam ABC-2 type transporter 1177 1391 IPR013525 GO:0016020|GO:0140359
Gso4g0601 1449 Pfam ABC-2 type transporter 503 715 IPR013525 GO:0016020|GO:0140359
Gso4g0601 1449 Gene3D - 868 1100 IPR027417 -
Gso4g0601 1449 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 852 1105 IPR003439 GO:0005524
Gso4g0601 1449 Pfam ABC-transporter N-terminal 91 142 IPR029481 -
Gso4g0601 1449 Pfam ABC transporter 880 1032 IPR003439 GO:0005524
Gso4g0601 1449 Pfam ABC transporter 167 349 IPR003439 GO:0005524
Gso4g0601 1449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 424 IPR027417 -
Gso4g0601 1449 Pfam ABC-2 type transporter 382 434 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0601 Gso-Chr4 5792786 5800351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0601 890 1064 Calmodulin-binding Proteins AT2G36910 25.000 6.33e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0601 K08711 - gmx:100815197 2830.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0601 4 5792786 5800351 Gso6g0601 6 5538945 5546696 GST
Gso17g1750 17 33998695 34007210 Gso4g0601 4 5792786 5800351 PCT
Gso4g0601 4 5792786 5800351 Gso14g1038 14 16612685 16621522 PCT
Gso4g0601 4 5792786 5800351 Gso17g1747 17 33880658 33891175 PCT