Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0597 ATGTCAACGACGCATGCGAAGAAGATGTTTGCAAGGTTTTGTTTCTGCCATGATGAGGCTGCGGATGATGAGAGACATAGAAACCACATAGAGTTTGATCAAATGACGAATGAAGGAAGCCAATACAGCCTCACCGGCATTCCGCTTCCGCCTCTCGGCGCCACTAGCGCTGGCCACTCCGGGAGACACAAGCTCCGGAGTTACATTGTCTCGCCGTACAACCCTCGTTACAGATTGTGGAACACGTTTCTGGTGTTGTTAGTTTTCTACACTGCATTTGTTTGCCCTTTTGAGTTTGGATTCCTTAGTGATCCATCGCTTCCTCTTTCCATTGTTGACAATGTGGTGAACGGTTTTTTTGCCATTGACATTGTTCTGACCTTCTTTGTTGCCTACCTCGACAAGACTACGTATCTGCTCGTGGATGAACCAAAGCTCATTGCCTCGAGATATCTTAAAACATGGTTTGCCTTTGATGTCATTGCCACCATCCCTGCTGAAATTGCCCGCGACTCGTTGCCCCCTGATTTAAAGTCATATGGCGTGTTCAACATGCTCCGACTTTGGCGTCTCCGTCGAGTTAGTGCCATGTTTGCAAGATTAGAAAAGGACAGAAATTATAACTACTTCTGGGTGCGCTGTTCAAAGCTTATATGTGTTACTCTATTTTCAATGCATTTTGCTGCCTGCATTTTCTATTTTCTTGCTTTAGATCGTGACCCAAGTTCAACATGGCTTAGCCTGGTTTCTGAAGACGCTCAAAGCAGTGTTTGGAAGCGCTACGTAACATCAATGTACTGGTCCATAGTGACTCTTGCAACAGTCGGTTATGGTGACTTGCATCCTGTAAGTACCAGGGAGATGGTGTTTGACATATTTTATATGCTCTTTAACCTCGGACTAACGGCATATCTCATCGGAAACATGACAAACTTGATTGTTCATGGAACAAGCAGAACTAGGAAATATAGAGACACGGTGCAAGCTGCCACAGGTTTCGCCCATCGGAATCAGTTACCTATCCGCTTGGAAGAACAGATGCTTGCTCATTTGTTTTTGAAGTACAGAACTGATTTAGAAGGATTGCAGCAACAAGAAATTATTGAATCCCTTCCAAAGGCTATTAGGTCTAGCATCTCACACTACCTATTCTATCCACTTGTGGACAAGGTGTACTTGTTTCATGGAGTGTCAAGTGACCTACTCTTTCAACTGGTCACGGAGATGAGGGCCGAGTATTTTCCTCCAAAGGAAGATGTGATTTTGCAGAATGAAGCGCCAACAGACCTTTATATCGTTGTTACTGGTGCTGCAGAACTCATCATTAGAAAGAATGGAATGGAACAGGTCATTGGTGAGGTAGGATTTGGAGATATAGTTGGAGAAATTGGAGTTCTATGTTACAGGCCACAGACGTTTACAGTTCGAACCAAACGATTGAGCCAAATTCTGCGCTTGAACCGTACTACATTTCTAAATCTTGTTCATTCAAATATTGGAGATGGGACAATAGTCATGAACAATTTTCTCCAGCATTTGCAAGAATCAAGGTATCCAGGGATGGATGCAATTTTGGCAGAAACGGAGGCCATGCTTGCTCGGGGAAAAATGGACATGCCCATTACCACATGCTTTGCAGCAAGCAGAAATGATGATCTATTATTGCATCGTTTGCTTAAGAAGGGTTCAGATCCAAATGAATTAGATAAGAATGGAAAGACAACACTGCATATTGCAGCTTCCAAAGGCAATGAGCATTGTGTAAATTTGCTTCTAGAATATGGTGCAGACCCCAATAGCAAAGATATGGATGGAAGTGTCCCACTATGGGAAGCAATGAAGGGTAGGCATGAATCTGTGATGAAAATTCTCATAGACAATGGTGCAGACATATCTTTAGCCAATGCAGGCCATCTAGCATGCAGTGCTGTTGAGCAAAATAACATGGAATTGCTCAAGGAAATTATTCAATGTGGCGTGGATGTGACACAACCTAAAAAGAATGGAATCACTGCTCTTCATACTGCAATAGCTGAAGGAAACACTGAGATGATTAACTTCCTTGTAGACCAAGGAGCAGACATTGACATGCCAGATGCTAATGGGTGGACTCCTAGGGTTATGGCAGAACAACACGGACGCGAAGAAATTAGAAATATATTTGATAACATCAAAGAGAGCAGAAAACCAAGTGTTATTCCAATACCAAGGAATGACAACAGGAGTGGGAGGTTTCAAATTGATCCAAGCATGCCTGCCATAACCCAAGAAAGCATGTCACTGCTACCTTATCATGGGAGAAGGTCTTCCAGCTCTTTTGATAATTCCATTTTTGGAATGATCTCAATTGCCAATCGTGGTAAGGTATCTGAAGGCCGTAGCAGTAATAGAGGGAACGTGAATGGATTAACCAGAGTGACACTTAGTTGTCCTGAAAAGGGTGAACATGCTGGAAAACTTGTTTTGCTGCCCAAGACCCTTGAAGAGCTGCTAGATATTGGTGCCAGAAAGTTTGATATATCTGCCACCAAAATTTTGACCATAGATGGAGCTGAAGTGGACGATATAAATCTTTTAAGAGATGGTGATCATCTTATTATTGCCGGTACTTGTATTGAAGAGGAAAACAAGAATTGA 2637 0.4274 MSTTHAKKMFARFCFCHDEAADDERHRNHIEFDQMTNEGSQYSLTGIPLPPLGATSAGHSGRHKLRSYIVSPYNPRYRLWNTFLVLLVFYTAFVCPFEFGFLSDPSLPLSIVDNVVNGFFAIDIVLTFFVAYLDKTTYLLVDEPKLIASRYLKTWFAFDVIATIPAEIARDSLPPDLKSYGVFNMLRLWRLRRVSAMFARLEKDRNYNYFWVRCSKLICVTLFSMHFAACIFYFLALDRDPSSTWLSLVSEDAQSSVWKRYVTSMYWSIVTLATVGYGDLHPVSTREMVFDIFYMLFNLGLTAYLIGNMTNLIVHGTSRTRKYRDTVQAATGFAHRNQLPIRLEEQMLAHLFLKYRTDLEGLQQQEIIESLPKAIRSSISHYLFYPLVDKVYLFHGVSSDLLFQLVTEMRAEYFPPKEDVILQNEAPTDLYIVVTGAAELIIRKNGMEQVIGEVGFGDIVGEIGVLCYRPQTFTVRTKRLSQILRLNRTTFLNLVHSNIGDGTIVMNNFLQHLQESRYPGMDAILAETEAMLARGKMDMPITTCFAASRNDDLLLHRLLKKGSDPNELDKNGKTTLHIAASKGNEHCVNLLLEYGADPNSKDMDGSVPLWEAMKGRHESVMKILIDNGADISLANAGHLACSAVEQNNMELLKEIIQCGVDVTQPKKNGITALHTAIAEGNTEMINFLVDQGADIDMPDANGWTPRVMAEQHGREEIRNIFDNIKESRKPSVIPIPRNDNRSGRFQIDPSMPAITQESMSLLPYHGRRSSSSFDNSIFGMISIANRGKVSEGRSSNRGNVNGLTRVTLSCPEKGEHAGKLVLLPKTLEELLDIGARKFDISATKILTIDGAEVDDINLLRDGDHLIIAGTCIEEENKN* 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0597 878 ProSiteProfiles Ankyrin repeat profile. 604 636 IPR002110 GO:0005515
Gso4g0597 878 Gene3D Jelly Rolls 359 518 IPR014710 -
Gso4g0597 878 ProSiteProfiles cAMP/cGMP binding motif profile. 393 512 IPR000595 -
Gso4g0597 878 ProSiteProfiles Ankyrin repeat region circular profile. 571 602 - -
Gso4g0597 878 CDD CAP_ED 393 498 IPR000595 -
Gso4g0597 878 SMART ANK_2a 635 664 IPR002110 GO:0005515
Gso4g0597 878 SMART ANK_2a 668 697 IPR002110 GO:0005515
Gso4g0597 878 SMART ANK_2a 604 633 IPR002110 GO:0005515
Gso4g0597 878 SMART ANK_2a 571 600 IPR002110 GO:0005515
Gso4g0597 878 SMART ANK_2a 538 567 IPR002110 GO:0005515
Gso4g0597 878 ProSiteProfiles Ankyrin repeat region circular profile. 604 635 - -
Gso4g0597 878 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 1 878 - -
Gso4g0597 878 ProSiteProfiles KHA domain profile. 805 878 IPR021789 -
Gso4g0597 878 PANTHER POTASSIUM CHANNEL AKT1 1 878 IPR045319 GO:0005249|GO:0006813
Gso4g0597 878 SUPERFAMILY Ankyrin repeat 544 721 IPR036770 -
Gso4g0597 878 SMART cnmp_10 393 510 IPR000595 -
Gso4g0597 878 Gene3D - 540 723 IPR036770 -
Gso4g0597 878 PRINTS Ankyrin repeat signature 572 587 IPR002110 GO:0005515
Gso4g0597 878 PRINTS Ankyrin repeat signature 620 634 IPR002110 GO:0005515
Gso4g0597 878 SUPERFAMILY cAMP-binding domain-like 318 513 IPR018490 -
Gso4g0597 878 Pfam Cyclic nucleotide-binding domain 413 498 IPR000595 -
Gso4g0597 878 ProSiteProfiles Ankyrin repeat profile. 668 700 IPR002110 GO:0005515
Gso4g0597 878 Pfam KHA, dimerisation domain of potassium ion channel 805 867 IPR021789 -
Gso4g0597 878 Pfam Ion transport protein 78 320 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso4g0597 878 Pfam Ankyrin repeats (3 copies) 545 633 IPR002110 GO:0005515
Gso4g0597 878 Pfam Ankyrin repeats (3 copies) 639 720 IPR002110 GO:0005515
Gso4g0597 878 ProSiteProfiles Ankyrin repeat profile. 571 603 IPR002110 GO:0005515
Gso4g0597 878 Gene3D - 78 314 - -
Gso4g0597 878 SUPERFAMILY Voltage-gated potassium channels 72 314 - -
Gso4g0597 878 PRINTS EAG/ELK/ERG potassium channel family signature 90 97 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso4g0597 878 PRINTS EAG/ELK/ERG potassium channel family signature 113 123 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso4g0597 878 PRINTS EAG/ELK/ERG potassium channel family signature 124 133 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso4g0597 878 PRINTS EAG/ELK/ERG potassium channel family signature 261 278 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso4g0597 878 PRINTS EAG/ELK/ERG potassium channel family signature 287 298 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso4g0597 878 PRINTS EAG/ELK/ERG potassium channel family signature 305 314 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso4g0597 878 ProSiteProfiles Ankyrin repeat region circular profile. 668 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0597 Gso-Chr4 5754433 5760986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0597 33 868 Ion Channels AT2G25600 58.851 0.0 1013
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0597 K21867 - gmx:100786870 1755.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0597 4 5754433 5760986 Gso6g0595 6 5493912 5499868 GST
Gso14g1030 14 16323930 16338380 Gso4g0597 4 5754433 5760986 PCT
Gso17g1763 17 34327212 34334891 Gso4g0597 4 5754433 5760986 PCT
Gso4g0597 4 5754433 5760986 Gso14g1030 14 16323930 16338380 PCT
Gso4g0597 4 5754433 5760986 Gso17g1763 17 34327212 34334891 PCT