Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0585 ATGGCTGTGGTTTTTCAGTGTTTATGGTGTGCTCGGAGTGACCCCTTCCTCACTCTTCCTTTCCAACGCAAACCACTTCTTTGCTCTGTCTTTCTTTCCTCTCGCCCTCGTAACCTCTGCTCTTCAATTGTCGCTGCTGCTTCCAAAAACAAAAACAAGCAAAAAAAGTCTCGTGATCATGTTACTAAGGACGATGAAGATGGCGTGGACGCTTTTGAGCTGCTCTTCAAGCAACTCGAAGAAGATCTCAAACGCGGTGATTTGTCAGACGATGATGGTGAGGATGAGATAAGTGAAGAAGACATGGCATTGCTTGAACGTGAGTTGGAAAATGCTTTGGGGGACTTTGATGGTGAATTGTTAAACTCGGATGTAATCGACATCGAAACTGGCGGTGATCCAGAAAATGATGATGATATTGAGGATGGTGGAGATGAAAGGTCACTGAACCTTAGGAATTGGCAGATGAAGAAATTGGCTAGAGCCTTAAAAGCTGGCCGCCGCAAAACAAGTATAAAAAATCTTGCTGCCGATCTTTGTCTTGATAGGGCTCTTGTTCTTCAATTGCTTCGTGACCCTCCTCCAAATCTTTTAATGATGAGTCTATCAATACCTGATGAACCCACAACGACTGTAGTATCACTTGAAACTAAGCCCAGTGAGATTGTTCATAAAGAAACAAGTATTGATCATGCAGAAATAGAATCTGAACCTAAGGCTAAAGTACCTGTTCATACCTTGCAACGTAATTGGCATGCTCAAAAGCGACTGAAAAAGGCCCATGTTGACACTTTGGAGAGAGTTTATAGGAGATCAAAACGACCCACTAATGCAATGATCAGTAGTATCGTACATGTAACAAACATTCCTCGAAAAAAAGTTGTTAAGTGGTTTGAAGACAAACGTGCTGAGGAGGGAGTTCCAGATCGCCGTGTTCCTTACCAGCGCTCTGTTCCTGAAACTGCATGA 969 0.4303 MAVVFQCLWCARSDPFLTLPFQRKPLLCSVFLSSRPRNLCSSIVAAASKNKNKQKKSRDHVTKDDEDGVDAFELLFKQLEEDLKRGDLSDDDGEDEISEEDMALLERELENALGDFDGELLNSDVIDIETGGDPENDDDIEDGGDERSLNLRNWQMKKLARALKAGRRKTSIKNLAADLCLDRALVLQLLRDPPPNLLMMSLSIPDEPTTTVVSLETKPSEIVHKETSIDHAEIESEPKAKVPVHTLQRNWHAQKRLKKAHVDTLERVYRRSKRPTNAMISSIVHVTNIPRKKVVKWFEDKRAEEGVPDRRVPYQRSVPETA* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0585 322 PANTHER ZINC-FINGERS AND HOMEOBOXES RELATED 42 317 - -
Gso4g0585 322 SMART HOX_1 254 312 IPR001356 GO:0003677
Gso4g0585 322 Gene3D - 250 309 - -
Gso4g0585 322 CDD homeodomain 254 303 IPR001356 GO:0003677
Gso4g0585 322 PANTHER HOMEOBOX PROTEIN 8 42 317 - -
Gso4g0585 322 SUPERFAMILY Homeodomain-like 250 314 IPR009057 -
Gso4g0585 322 MobiDBLite consensus disorder prediction 303 322 - -
Gso4g0585 322 ProSiteProfiles 'Homeobox' domain profile. 248 308 IPR001356 GO:0003677
Gso4g0585 322 Pfam Homeodomain 256 304 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0585 Gso-Chr4 5663312 5666321 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gso4g0585 Homeodomain 8.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0585 - - gmx:100784216 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0585 4 5663312 5666321 Gso6g0584 6 5404278 5407769 GST