Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0576 ATGGTACAAGCAAAGAAGTTCAGAGGAGTCAGGCAACGCCAGTGGGGCTCCTGGGTGTCAGAAATTCGCCACCCTTTACTGAAGAGAAGGGTGTGGCTAGGGACATTTGAGACAGCTGAGGCAGCAGCAAGGGCATATGACCAAGCAGCCATTTTGATGAATGGTCAGAATGCAAAGACCAATTTCCCCACCTCAAAGAACCAAGCTGAAGCTGATCATGACAACAACAACACTTTCTTATCTCCAAAAGCTCTTTCAGAACTACTCAGCACAAAGCTGAGAAAGTACTGCAAAGACCCTGCTCCTTCCCTCACTTGCCTGAGGCTAGATGCTGATAATTCCCACATTGGAGTGTGGCAAAAAGGGGCAGGACCACATTCTGGCTCCAACTGGGTCATGAGGGTAGAGCTTGGAAAGAAACAAATTATAACCGAGGGTGAGTCAACGGGGTCACCCCAAAGTACTAATATTGGTGCTGTTGAAAATAATGAAGTAGAAGTAGAAGTAGAAGTAGAAGAAGAAGAAGAAGAGGATAGAGTGGCTTTGCAGATGATTGAAGAACTACTCAATTGGAACTAG 579 0.4594 MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPTSKNQAEADHDNNNTFLSPKALSELLSTKLRKYCKDPAPSLTCLRLDADNSHIGVWQKGAGPHSGSNWVMRVELGKKQIITEGESTGSPQSTNIGAVENNEVEVEVEVEEEEEEDRVALQMIEELLNWN* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0576 192 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 192 - -
Gso4g0576 192 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Gso4g0576 192 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Gso4g0576 192 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Gso4g0576 192 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Gso4g0576 192 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Gso4g0576 192 Coils Coil 157 177 - -
Gso4g0576 192 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Gso4g0576 192 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Gso4g0576 192 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 192 - -
Gso4g0576 192 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0576 Gso-Chr4 5586205 5587746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0576 1 191 AP2-EREBP Transcription Factor Family AT5G25390 62.304 5.36e-80 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso4g0576 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0576 - - gmx:100806821 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0576 4 5586205 5587746 Gso6g0575 6 5331446 5332654 GST