Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0571 ATGGAAATACATTGGCCTTTCTTCCATATTACGGGTACCCTTTTCCTTTTGTGCAAAGTTTGTTTAGCCGGAATTCAATATTCTGGAAGTGTCTCACCCGGAATAATAAATGGTTCTCAAATGAATTGGATTGACAGAGATGGCAAGTTCCTTGTCTCAAAAGAGGGACAATTTGCCTTTGCCTTTGTCGCCACTGCAAATGACTCCACCAAGTTTCTTCTTGCAATCGTCCACGTGGCCACTGAAAGGGTAATTTGGACCGCCAATAGAGCAGTTCCTGTTGCTAACTCAGACAATTTTGTGTTTGATGAAAAGGGCAACGCTTTCTTAGAGAAAGATGGAACCTTGGTTTGGTCCACAAACACAAGTAACAAAGGGGTTTCTTCAATGGAATTGCTTGACACAGGGAACTTGGTTTTGCTTGGGAGTGATAATAGTACAGTGATTTGGCAGAGTTTCAACCATCCAACAGATACTTTGTTGCCAACTCAGGAGTTCACTGAGGGAATGAAACTCATCAGTGATCCTAGCACGAACAACCTGACCCATTTTCTTGAGATCAAGTCTGGTAATGTTGTTCTCACCGCAGGTTTTCGAACCTTGCAGCCTTATTGGACTATGCAGAAGGACAACCGCAAAGTCATTAATAAGGACGGTGATGCGGTGGCTTCAGCAAACATTAGTGGAAACTCATGGAGGTTCTATGGCAAAAGCAAATCACTGTTGTGGCAATTCATTTTCTCTACAGACCAAGGCACAAATGCGACTTGGATTGCTGTTTTGGGGAGTGATGGCTTCATTACTTTCTCAAACCTCAACGGTGGAGAGTCAAATGCTGCTTCTCAAAGAATACCCCAAGATTCTTGTGCTACACCGGAACCTTGTGATGCATACACCATATGCACAGGTAACCAAAGGTGTAGTTGCCCTTCTGTTATTCCTAGTTGCAAACCTGGTTTTGACTCTCCTTGTGGTGGTGACTCAGAAAAGTCCATTCAGTTGGTTAAAGCTGATGATGGACTCGATTACTTTGCGCTTCAATTCCTTCAACCTTTTTCGATAACCGATTTGGCTGGTTGCCAATCTTCTTGCCGTGGAAATTGTTCATGCCTTGCTTTGTTCTTCCACATAAGTTCAGGGGACTGTTTCCTTTTGAACAGTGTAGGAAGCTTTCAGAAACCTGATTCTGATTCTGGTTATGTTTCTTACATCAAGGTCTCGACGGTTGGAGGTGCTGGCACGGGTTCTGGGGGCAGTGGAGGTGGCAATAAGCACACCATAGTTGTTGTGGTCATTGTCATAATAACCTTGCTTGTCATTTGTGGTCTGGTCTTTGGGGGAGTTAGATACCACAGAAGAAAGCAAAGGTTGCCCGAGTCTCCTAGAGATGGTTCAGAAGAGGACAATTTCTTGGAGAATTTAACTGGTATGCCAATCCGTTACAGCTACAAGGACCTTGAAACTGCCACTAATAACTTCTCTGTCAAGCTTGGGCAAGGGGGTTTTGGGTCAGTGTATAAAGGAGCTCTACCAGATGGGACTCAATTAGCAGTGAAGAAGTTGGAAGGTATTGGACAAGGGAAGAAAGAATTCAGGGCCGAAGTTAGCATCATTGGAAGCATTCATCATCTTCATTTGGTTAGGCTTAGGGGATTCTGTGCTGATGGAACTCATAGGCTCCTTGCTTATGAGTACTTGTCTAATGGCTCCTTGGATAAATGGATATTCAAGAAAAACAAAGGTGAGTTTCTGTTGGATTGGGATACTAGGTTCAATATAGCTCTGGGAACAGCAAAAGGACTTGCTTACCTTCATGAAGATTGCGACTCTAAGATTGTTCATTGTGACATCAAGCCGGAAAACGTGCTTCTGGATGACCACTTCATGGCCAAGGTTTCGGATTTCGGACTGGCTAAGCTCATGAACCGAGAACAAAGCCATGTTTTCACAACACTGAGGGGCACCAGGGGCTATCTTGCACCGGAGTGGATAACAAACTATGCTATATCAGAGAAAAGTGATGTCTATAGCTATGGCATGGTGCTACTAGAGATCATTGGGGGAAGGAAAAACTATGATCCTAGAGAGAGTTCAGAGAAATCCCATTTCCCAACTTATGCATTTAAGATGATGGAAGAAGGGAAGCTGAGAGATATTTTTGACTCGGAGTTGGAAATTGATGAGAATGATGATAGGTTTCAATGTGCTATCAAAGTTGCATTGTGGTGCATTCAGGAAGACATGTCAATGAGGCCATCTATGACCAGGGTTGTCCAAATGTTGGAGGGTATTTGTATTGTTCCTAAGCCACCAACTAGTTCTTCCTTGGGTTCTCGCCTTTATGCCACTATGTTCAAATCCTCCAGTGAAGAAGGGGCCACCTCTTCTGCTCCCTCAGACTGTAACAGTGATGCTTATCTCTCCGCGGTTCGCCTTTCAGGACCTAGATAA 2451 0.4386 MEIHWPFFHITGTLFLLCKVCLAGIQYSGSVSPGIINGSQMNWIDRDGKFLVSKEGQFAFAFVATANDSTKFLLAIVHVATERVIWTANRAVPVANSDNFVFDEKGNAFLEKDGTLVWSTNTSNKGVSSMELLDTGNLVLLGSDNSTVIWQSFNHPTDTLLPTQEFTEGMKLISDPSTNNLTHFLEIKSGNVVLTAGFRTLQPYWTMQKDNRKVINKDGDAVASANISGNSWRFYGKSKSLLWQFIFSTDQGTNATWIAVLGSDGFITFSNLNGGESNAASQRIPQDSCATPEPCDAYTICTGNQRCSCPSVIPSCKPGFDSPCGGDSEKSIQLVKADDGLDYFALQFLQPFSITDLAGCQSSCRGNCSCLALFFHISSGDCFLLNSVGSFQKPDSDSGYVSYIKVSTVGGAGTGSGGSGGGNKHTIVVVVIVIITLLVICGLVFGGVRYHRRKQRLPESPRDGSEEDNFLENLTGMPIRYSYKDLETATNNFSVKLGQGGFGSVYKGALPDGTQLAVKKLEGIGQGKKEFRAEVSIIGSIHHLHLVRLRGFCADGTHRLLAYEYLSNGSLDKWIFKKNKGEFLLDWDTRFNIALGTAKGLAYLHEDCDSKIVHCDIKPENVLLDDHFMAKVSDFGLAKLMNREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDPRESSEKSHFPTYAFKMMEEGKLRDIFDSELEIDENDDRFQCAIKVALWCIQEDMSMRPSMTRVVQMLEGICIVPKPPTSSSLGSRLYATMFKSSSEEGATSSAPSDCNSDAYLSAVRLSGPR* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0571 816 Gene3D Phosphorylase Kinase; domain 1 460 565 - -
Gso4g0571 816 ProSiteProfiles Bulb-type lectin domain profile. 36 153 IPR001480 -
Gso4g0571 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 612 624 IPR008271 GO:0004672|GO:0006468
Gso4g0571 816 SMART blect_4 42 156 IPR001480 -
Gso4g0571 816 CDD B_lectin 44 156 IPR001480 -
Gso4g0571 816 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 8 816 - -
Gso4g0571 816 Pfam Protein kinase domain 495 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0571 816 CDD STKc_IRAK 497 764 - -
Gso4g0571 816 PIRSF SRK 5 811 IPR024171 GO:0004674
Gso4g0571 816 Gene3D Transferase(Phosphotransferase) domain 1 566 768 - -
Gso4g0571 816 ProSitePatterns Protein kinases ATP-binding region signature. 497 520 IPR017441 GO:0005524
Gso4g0571 816 SUPERFAMILY Protein kinase-like (PK-like) 472 763 IPR011009 -
Gso4g0571 816 Gene3D - 41 155 IPR036426 -
Gso4g0571 816 ProSiteProfiles Protein kinase domain profile. 491 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0571 816 SUPERFAMILY WD40 repeat-like 111 276 IPR036322 GO:0005515
Gso4g0571 816 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 8 816 - -
Gso4g0571 816 CDD PAN_AP_plant 352 407 - -
Gso4g0571 816 Pfam D-mannose binding lectin 84 167 IPR001480 -
Gso4g0571 816 SMART serkin_6 491 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0571 816 SUPERFAMILY alpha-D-mannose-specific plant lectins 84 174 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0571 Gso-Chr4 5536356 5539467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0571 435 773 Receptor kinase-like Gene Family AT5G20050 45.961 1.82e-95 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gso4g0571 Pkinase 1.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0571 - - gmx:100782258 1628.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0571 4 5536356 5539467 Gso6g0568 6 5270751 5274063 GST
Gso14g1005 14 14557441 14560868 Gso4g0571 4 5536356 5539467 PCT
Gso17g1793 17 35139491 35142962 Gso4g0571 4 5536356 5539467 PCT
Gso4g0571 4 5536356 5539467 Gso14g1005 14 14557441 14560868 PCT
Gso4g0571 4 5536356 5539467 Gso17g1793 17 35139491 35142962 PCT