Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0567 ATGGAAGTTGACTTAGTTCTTGCTCTCCCCACTCAAAATTCCGTTGAGGAATTCAAGCTTAACAAGTCGAAACAGATAGTGAGTTTACAGTTATGGAGAGCCAGTTGCGGTTCAGAAAGCGAAAAACGTGTCAAACACAATAAGCGCAGCTTCGAAGAGTCCTTTGGACATTTTTTGAAACCTTTGCCTTTACTAGTTTGGAGTGGACAGCCAAATGAAGAAGATGACCGCAGTGAAAAGGTGCAAAGAAACATTCACATACCAAACAAGAATGGTGATGAAGAAAACCATTTGGTGGGGTGGCCACCAGTTAAATCATGGAGGAGGAAAGAACTCCATCAGCAGCATCCTGCGAGAGGCCGAATTAGGAACGATAGGATTCAAGCTAATGAAAATCAAAGTAGAGGACCAAACTCTTTATATGTCAAGGTTAACATGGAAGGGGTAGCCATAGGAAGGAAAATCAATTTGAGGCTTTTCAATTCTTATCAGACACTCACAAGCAGCTTGATCAGCATGTTTGCTAAATACCAAAAATTTGAGGAAGTTGGAGAAAGTTACACGCTCACCTTTCAAAACGAACAAGGGGAATGGCTGCAAGTAGGACATGTTCCATGGCAATCCTTTATAGGTACTGTGCGGCGTTTAGTGATACTGAGGAATGGAAGTGAAACTATTTGA 681 0.417 MEVDLVLALPTQNSVEEFKLNKSKQIVSLQLWRASCGSESEKRVKHNKRSFEESFGHFLKPLPLLVWSGQPNEEDDRSEKVQRNIHIPNKNGDEENHLVGWPPVKSWRRKELHQQHPARGRIRNDRIQANENQSRGPNSLYVKVNMEGVAIGRKINLRLFNSYQTLTSSLISMFAKYQKFEEVGESYTLTFQNEQGEWLQVGHVPWQSFIGTVRRLVILRNGSETI* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0567 226 Pfam AUX/IAA family 3 177 IPR033389 -
Gso4g0567 226 Pfam AUX/IAA family 184 224 IPR033389 -
Gso4g0567 226 PANTHER AUXIN-RESPONSIVE PROTEIN IAA29 1 222 - -
Gso4g0567 226 SUPERFAMILY CAD & PB1 domains 133 216 - -
Gso4g0567 226 MobiDBLite consensus disorder prediction 112 138 - -
Gso4g0567 226 Gene3D - 140 225 - -
Gso4g0567 226 ProSiteProfiles PB1 domain profile. 139 226 IPR000270 GO:0005515
Gso4g0567 226 MobiDBLite consensus disorder prediction 112 128 - -
Gso4g0567 226 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 222 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0567 Gso-Chr4 5494623 5496645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0567 131 218 B3 DNA Binding Superfamily AT1G59750 32.955 4.25e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso4g0567 AUX_IAA 2e-25 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0567 K14484 - gmx:100802759 462.611