Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0564 ATGGCACAAGATATTGCTACTCCACCAGTTCCTTTTGATTTTGAACTCTTGGTTGGTGATCACCTTAGAACTGTCACAGCCTCATCCAACAGCAGCAGGACAGACCCATGGATTGAACCTGAAAGGTTGAAACTCAGACACAGGATTGGTCGGGGACCCTTTGGTGATGTTTGGTTAGCAACTCATCATCAATCAACTGAAGATTATGATGAGTATCATGAAGTTGCTGCCAAGATGTTACCTCCAATCAGAGAGGAACATATGAAGACTGCATTAGAGAAATTTTGTGAATTATATTTTCAGTGCCAAGGAGCGGCTAGGGTGTGCTGGCTACTTGGAATTTCAATTTTAAATGGAAGGATATGCATCATTATGAATTTTTATGAGGGTTCAGTTGGTGACAAGATGGCTAAACTCAGAGAGGGAAGGATTTCATTGCCTGGTGTTCTGAGGTATGGTATCAATCTGGCTAAAGGTATTCTGGAACTTCACTCGAAAGGGATCCTAGTTCTCAACCTTAAACCGTCTAATGTGCTTCTTGATGATACTGATCAAGCAATACTGGGAGATATTGGTATTCCGAATCTTCTGTTTGGTTCCTCATTCCTTAGCTCAGATATGGCCAACAGGCTTGGTACTCCAAACTACATGGCTCCAGAACAATGGCAACCAGAAGTCAGGGGCCCTGTATCCTTTGAAACAGATTCATGGGGATTTGGGTGCACTATTTTGGAAATGTTGACTGGTAATCAACCTTGGTATGGGTGTCCTGTTGGTGAAATATACCAATCGGTTGTTGAAAAGTATGAAAAACCCCTAATTCCTAGTGGCCTTCCTTCTTCAGTTGAAAATATCCTCAGTGGTTGTTTTGAATATGATTTGAGGAATCGCCCTTCAATGGTAGATATTCTGGCTGTCTTTAGAAGCTCACTGAATGCAGTAGCCAATGATGGAGGATGGATATATCTTGGAACTAACAAAACTATGGCAAAATCAAGTAGCACTGGCTACAGTCAGTGGTCCCTCTCAAAGGATCATCTTCAGGTGGGTGATACAGTGCGCTCTAGAAAGCTTTCCAATTCATGCAATCCTCAAAACATGGAGGTCCCAGAAGGAAATGTTGTTGGTTTAGAACGCAATGTAGATCATGGATTTGTTCTAGTGAGGCTCCATGGTGTTCATGACCCTGTAAGGATTCGTGCATCGACTCTTGAACGTGTCACCAATGGTTTGGGAGCTGGGGATTGGGTACGCTTGAAAGAAGAAGATGACAAGCACTCGCCAGTGGGTATTCTTCATTCTATCAATCGTGATGGCAGAGTGACTGTTGGGTTTATTGGTCTGCAAACTCTTTGGAACGGTAACTGTTCAGATCTTGAAATGGCAGAACCTTACTGCGTGGGCCAGTTTATTAGGCTGAAAGCCAATGTTTTGAGTCCTCGATTTGAATGGCCACGTAAAAGGGGAGGTGCCTGGGCTACTGGTAAGATTTCTTGGATCCTACCAAATGGATGTCTAGTTGTCAAGTTTCCAGGCATGTTGAACTTTTGGGATGCACCAAGAACTGTCTTGGCTGATCCCTCCGAGGTTGATGTCGTTAACTTTAAGAATTGTCCGAAGATGATAGAGAAGTATCAACATGTAGAGGATCACCACTGGGCAGTTAGACCTGTTCTGATTGCATTTGGCTTTCTTACTGCTGTGAAACTAGGAATGTCAATTGGAAAGAAACTTGGGAGGAACATGAATGCTAATGCAATGGATAGTGAAAGTCATTATACAGATAACCAGAATGCTAGCCCTACATGGACATCTTCAGTGGCTAACATCTTTTCCAGAGAAGGTGTTAACTTGGCTAATGGTCGCTAG 1869 0.4302 MAQDIATPPVPFDFELLVGDHLRTVTASSNSSRTDPWIEPERLKLRHRIGRGPFGDVWLATHHQSTEDYDEYHEVAAKMLPPIREEHMKTALEKFCELYFQCQGAARVCWLLGISILNGRICIIMNFYEGSVGDKMAKLREGRISLPGVLRYGINLAKGILELHSKGILVLNLKPSNVLLDDTDQAILGDIGIPNLLFGSSFLSSDMANRLGTPNYMAPEQWQPEVRGPVSFETDSWGFGCTILEMLTGNQPWYGCPVGEIYQSVVEKYEKPLIPSGLPSSVENILSGCFEYDLRNRPSMVDILAVFRSSLNAVANDGGWIYLGTNKTMAKSSSTGYSQWSLSKDHLQVGDTVRSRKLSNSCNPQNMEVPEGNVVGLERNVDHGFVLVRLHGVHDPVRIRASTLERVTNGLGAGDWVRLKEEDDKHSPVGILHSINRDGRVTVGFIGLQTLWNGNCSDLEMAEPYCVGQFIRLKANVLSPRFEWPRKRGGAWATGKISWILPNGCLVVKFPGMLNFWDAPRTVLADPSEVDVVNFKNCPKMIEKYQHVEDHHWAVRPVLIAFGFLTAVKLGMSIGKKLGRNMNANAMDSESHYTDNQNASPTWTSSVANIFSREGVNLANGR* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0564 622 PANTHER OS06G0639500 PROTEIN 6 619 - -
Gso4g0564 622 PANTHER OS06G0639500 PROTEIN 6 619 - -
Gso4g0564 622 ProSiteProfiles Protein kinase domain profile. 43 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0564 622 Pfam Protein tyrosine and serine/threonine kinase 43 304 IPR001245 GO:0004672|GO:0006468
Gso4g0564 622 SUPERFAMILY Protein kinase-like (PK-like) 40 305 IPR011009 -
Gso4g0564 622 CDD STKc_PknB_like 44 309 - -
Gso4g0564 622 Gene3D Phosphorylase Kinase; domain 1 19 128 - -
Gso4g0564 622 Gene3D Transferase(Phosphotransferase) domain 1 129 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0564 Gso-Chr4 5468282 5472618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0564 34 314 MAP Kinase Kinase Kinase AT2G17700 25.614 2.26e-20 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Gso4g0564 PK_Tyr_Ser-Thr 2.7e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0564 - - gmx:100780636 1286.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0564 4 5468282 5472618 Gso6g0560 6 5201376 5205816 GST
Gso14g1000 14 14421248 14427151 Gso4g0564 4 5468282 5472618 PCT
Gso17g1797 17 35195574 35202809 Gso4g0564 4 5468282 5472618 PCT
Gso4g0564 4 5468282 5472618 Gso14g1000 14 14421248 14427151 PCT
Gso4g0564 4 5468282 5472618 Gso17g1797 17 35195574 35202809 PCT