Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0554 ATGGGGAAGCCCACGGGGAAGAAGAAGGGTACCGTTACTCCAGGCGCTGCAAATTCACACGCCAAGCACGGAAAATCTTCCAAAGCCTTCGATGAAGACACGGCGGTGTTCATCACCATGTCACAAGAGTTCAGGGAAGAAGGCAACAAGTTGTTTCAGAAGAAGGACCACGAAGGCGCCATGCTCAAGTATGAGAAGGCTCTGAAGCTTCTCCCGAACAACCACATCGATGTCGCGCACCTTCGCACCAACATGGCCACGTGTTACATGCAATTGGGTCTCGGGGAGTACCCTCGAGCAATTCACCAATGCAATTTGGCGCTGGAAGTGTCTCCGAGATACAGCAAAGCTCTATTGAAAAGAGCCACCTGCTATCGTGAGCTCAATCGCTTCGATTTGGCGCTCAGGGATGTTCAACTTGTTTTGGGCATGGAGCCTAATAACCTCACCGCGTTGGAGCTTCTCGAGAGTCTCGGAAAGTCAACGGAAGAAAAAGGGGTCTCTGTTGATGATAAAGGAGTGGCTTTTGATGCTACTGTTCATCACTCTCCAGCTCCTTCTTCGCAAAAACTGAAGAAAAAGAGAGGTAAAAAAACTGAGGACAACAAGGTGGTTGCGGAGGAAAAAGGGTTGAGTAGTAGTGTTGAGGACAAGGTGAGTTGTGTTGGGGACAAGGTGGTTGTTGTGGAAAAAGTGAGTAGTGTTGAGGATAAACAAGTGGTTTCGAAAACGATTGAGCAAGGGAAAAGGGTGGTGGAACCTGTGGAGGAAGAAAAAACTGTCACAATCACTAGGAGTGTGAAGTTGGTGTTTGGTGAGGATATAAGGTGGGCAGAGTTACCCGTGAATTGTAGTGTGAAGCTGGTGAGGGATATAGCTAGGGATCGGTATCCAGGTTTGAAGGGTGCTCTTGTCAAGTATAAGGATAAAGAGGGTGATTTGGTTACAATCACTACTACTGATGAACTGCGGCTAGCTGAAAAATCTGCTCCTGAGAAGGCATCGTTTAGGCTTTATATTACCGAGGTCAGTCCAGATCAAGAACCTTCTTATGATGGAAATGGAACAACCAATGGGGATGAAGTGCGAAGGGGCGATGGAAAACCGAGTGATGGTGCTGAGAATGGAGATATGGAAGAAGGAAAAGATAAAGATGTGGTGAAAAGGATGGTTACTGTGGAGGACTGGCTTCTCCAGTTTGCAAGGATGTTCAAGAACCATGTAGGGTTTGAGTCTGATTCTTATCTAGATACTCATGAGTATGCAATGAAGCTGTATGAAGAAGCAATAGAGGATTCAGTGGCAAGCAATGATGCTCAAGAACTTTTTAGAATGGCTGCGGATAAATTTCAAGAGATGGCTGCTTTGGCTTTGTTTAATTGGGGTAGTGTTCAGATGTCCCTGGCAAGGAACCAAGGTTTCTTTTTGGAGGATGGGGCAAGAGAGTCTTCCTTGGAGCATATAAAAGCTGCATATGAATTGGCACAAAAGGAGTATGAGAAAGCAGAAATGAGATATGAAGAAGCCTTGAAAATCAAACCTGACTTCTATGAAGGGTATCTTGCTCTTGGGCATCAGCAGTTTGAGCAAGCAAGGCTGTGCTGGTGTTATGCAATGGCATGCAAGAAGGACTTAGAAGCTGGCTTTTCTGATGAGGTTCTTAAACTTTATAACAAGGCAGAGGACAGCATGGAGAAAGGCATCTTGATGTGGGAGGAGATTGAGGAGCAGCGTTTGAATGGAATATCCAAATCAGATAAATATAAAGAACAGTTAGAGAAAATGGGCTTGGATAGTCTTCTCCAAGATATTTCTGATAATGAAGCTTCAAAGCAAGCTACAAAGATGAGGTCTCAGATACATCTTTTGTGGGGAACCTTGTTGTATGAACGTTCTGTTGTGGAATATAAGCTTGGCCTTCCCACATGGGAGGAATGTTTGGAGGTTGCAGTCGAAAAGTTTGAACTAGCTGGGACTTCTGCAACGGATATTGCTTTCATTGTAAAGAATCACTGCTCAAATGAAACAGCACTTGAAGGATTCAAAATTGATGAGATAGTACAGGCATGGAATGAGATGTATGATGCCCAAGGGTGGCAGTTTGGTGATCCATCATTCCGACTTGAACCATTGTTTCGTCGGCGTGTTCCTAAACTCCATTACAACTTGGAGCAATTTTAA 2181 0.4475 MGKPTGKKKGTVTPGAANSHAKHGKSSKAFDEDTAVFITMSQEFREEGNKLFQKKDHEGAMLKYEKALKLLPNNHIDVAHLRTNMATCYMQLGLGEYPRAIHQCNLALEVSPRYSKALLKRATCYRELNRFDLALRDVQLVLGMEPNNLTALELLESLGKSTEEKGVSVDDKGVAFDATVHHSPAPSSQKLKKKRGKKTEDNKVVAEEKGLSSSVEDKVSCVGDKVVVVEKVSSVEDKQVVSKTIEQGKRVVEPVEEEKTVTITRSVKLVFGEDIRWAELPVNCSVKLVRDIARDRYPGLKGALVKYKDKEGDLVTITTTDELRLAEKSAPEKASFRLYITEVSPDQEPSYDGNGTTNGDEVRRGDGKPSDGAENGDMEEGKDKDVVKRMVTVEDWLLQFARMFKNHVGFESDSYLDTHEYAMKLYEEAIEDSVASNDAQELFRMAADKFQEMAALALFNWGSVQMSLARNQGFFLEDGARESSLEHIKAAYELAQKEYEKAEMRYEEALKIKPDFYEGYLALGHQQFEQARLCWCYAMACKKDLEAGFSDEVLKLYNKAEDSMEKGILMWEEIEEQRLNGISKSDKYKEQLEKMGLDSLLQDISDNEASKQATKMRSQIHLLWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGTSATDIAFIVKNHCSNETALEGFKIDEIVQAWNEMYDAQGWQFGDPSFRLEPLFRRRVPKLHYNLEQF* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0554 726 MobiDBLite consensus disorder prediction 345 383 - -
Gso4g0554 726 SUPERFAMILY TPR-like 42 531 IPR011990 GO:0005515
Gso4g0554 726 ProSiteProfiles TPR repeat profile. 115 148 IPR019734 GO:0005515
Gso4g0554 726 SUPERFAMILY CAD & PB1 domains 263 351 - -
Gso4g0554 726 SUPERFAMILY TPR-like 420 619 IPR011990 GO:0005515
Gso4g0554 726 MobiDBLite consensus disorder prediction 359 383 - -
Gso4g0554 726 MobiDBLite consensus disorder prediction 1 28 - -
Gso4g0554 726 MobiDBLite consensus disorder prediction 179 205 - -
Gso4g0554 726 Coils Coil 485 512 - -
Gso4g0554 726 CDD PB1 267 340 - -
Gso4g0554 726 SMART tpr_5 41 74 IPR019734 GO:0005515
Gso4g0554 726 SMART tpr_5 483 516 IPR019734 GO:0005515
Gso4g0554 726 SMART tpr_5 79 114 IPR019734 GO:0005515
Gso4g0554 726 SMART tpr_5 115 148 IPR019734 GO:0005515
Gso4g0554 726 Gene3D Tetratricopeptide repeat domain 405 655 IPR011990 GO:0005515
Gso4g0554 726 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Gso4g0554 726 PANTHER PROTEIN PHOX4 1 725 - -
Gso4g0554 726 Gene3D Tetratricopeptide repeat domain 38 166 IPR011990 GO:0005515
Gso4g0554 726 Gene3D - 255 343 - -
Gso4g0554 726 PANTHER PROTEIN CLMP1 1 725 IPR044517 -
Gso4g0554 726 Pfam PB1 domain 264 341 IPR000270 GO:0005515
Gso4g0554 726 SMART PB1_new 264 343 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0554 Gso-Chr4 5356735 5361068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0554 25 148 Calmodulin-binding Proteins AT3G25230 30.075 7.12e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0554 - - gmx:100805760 1396.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0983 14 13787879 13793002 Gso4g0554 4 5356735 5361068 PCT
Gso4g0554 4 5356735 5361068 Gso14g0983 14 13787879 13793002 PCT