Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0548 ATGGCGTACCACCATAACCCCCAAGAGCTTCCACTTCACCATTTCACTGACCAACAACAACACCATAACCAACCTCTCGTTGACAACTCCTTGCTCTCCGACCCTGCTTCCAAACCTGCCTCCGATCCTCATCAACCCGCGCCAAATTGGCTCAACAACGCCCTTCTCCGCACGCACTACACTGACAACAACAACAACAACAACAACAACGTTAACGCTGCTAACAACAACACCAACAACGGCACCAACTTCCTCAATCTTCACACTTCCACTTCCGACTCCGGCCAATGGCTTGCTCGCCCGATCCTCAACCGCAACCACAGCGAGGTCATCGACGACGTGACCGGCGCCGGCGACTCCAACATGGCGGCCGCCGAATCCGGCGATTTGAAGGGTGATGCGGCGGCGGTGGAGGGAGGAAGCGACGGGCTTATGAACTGGCAGAATGCGAGGCTGAAGGCGGAGATTCTAGCGCATCCTCTGTACGAACAGCTTCTGTCGGCACACGTGGCGTGCTTGCGGATCGCCACGCCGGTCGACCAGTTGCCAAGGATCGACGCTCAGCTCACACAGTCCCAGAATGTGGTCGCCAAGTACTCTGCCTTCGGACAAGCCATCGTTGGCGACGATAAAGAACTCGATCAGTTCTTGTCCCACTATGTTCTGTTGCTCTGTTCTTTCAAAGAACAACTTCAACAGCATGTCCGGGTCCATGCAATGGAAGCAGTCATGGCTTGTTGGGAGATTGAGCAATCCTTACAAAGTTTAACAGGAGTTTCACCCGGGGAAGGTACGGGAGCGACAATGTCTGATGAGGAAGATGAACAAGTAGATAGTGATGCCAATCTGTTTGATGGTGCTTTGGATGGTCCTGATAGCATGGGATTCGGTCCTCTTATTCCCACAGAGAATGAGAGGTCCCTCATGGAACGTGTAAGACATGAATTAAAGCACGAATTGAAACAGGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACGACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCCACAGAGGAGGATAAGGCACGGTTGGTGCAGGAAACGGGTTTGCAGCTAAAGCAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGCATAGCAACCCCTCAACTTCTACTGCCTTGAAGAGCAAGCGCAAAAGGTCATAG 1242 0.5137 MAYHHNPQELPLHHFTDQQQHHNQPLVDNSLLSDPASKPASDPHQPAPNWLNNALLRTHYTDNNNNNNNNVNAANNNTNNGTNFLNLHTSTSDSGQWLARPILNRNHSEVIDDVTGAGDSNMAAAESGDLKGDAAAVEGGSDGLMNWQNARLKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLTQSQNVVAKYSAFGQAIVGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDEEDEQVDSDANLFDGALDGPDSMGFGPLIPTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTALKSKRKRS* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0548 413 ProSiteProfiles ELK domain profile. 315 335 IPR005539 GO:0003677
Gso4g0548 413 MobiDBLite consensus disorder prediction 18 50 - -
Gso4g0548 413 Pfam ELK domain 315 336 IPR005539 GO:0003677
Gso4g0548 413 SMART ELK_2 315 336 IPR005539 GO:0003677
Gso4g0548 413 MobiDBLite consensus disorder prediction 18 36 - -
Gso4g0548 413 SMART KNOX1_2 150 194 IPR005540 GO:0003677|GO:0005634
Gso4g0548 413 Gene3D - 336 397 - -
Gso4g0548 413 CDD homeodomain 338 399 IPR001356 GO:0003677
Gso4g0548 413 Pfam KNOX1 domain 152 192 IPR005540 GO:0003677|GO:0005634
Gso4g0548 413 ProSiteProfiles 'Homeobox' domain profile. 335 398 IPR001356 GO:0003677
Gso4g0548 413 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 36 412 - -
Gso4g0548 413 SMART KNOX2_2 203 258 IPR005541 GO:0003677|GO:0005634
Gso4g0548 413 SUPERFAMILY Homeodomain-like 337 401 IPR009057 -
Gso4g0548 413 SMART HOX_1 337 402 IPR001356 GO:0003677
Gso4g0548 413 Pfam Homeobox KN domain 355 394 IPR008422 GO:0003677|GO:0006355
Gso4g0548 413 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 36 412 - -
Gso4g0548 413 Pfam KNOX2 domain 207 257 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0548 Gso-Chr4 5307136 5310626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0548 1 412 Homeobox Transcription Factor Family AT5G25220 66.443 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gso4g0548 KNOX2 1.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0548 - - gmx:100790048 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0548 4 5307136 5310626 Gso6g0542 6 5050414 5054320 GST