Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0545 ATGGATCAACATAGAAGTGAGGTATTGGATCCGGTTCATGATGGGAATTTGAGCCATTCGGCTGAAGGGGTTGCAATTGCAAGAGATAATATAAGTGGAGAAGCTGGTACTTCAGGAGAGGTGGGTGAGGATTTGGGATCTGATAAGGAGCCAAAGGAGGAAGTTAAGGGTCAAGACAAGCGTGATCAAGAAAATATTAGTGATAATTTACCTGGGGTTGATCAGGGAACTAGTTATAATTCAAGGCATTTGGCTAATCAGGAAGTGATTGAAACTGTGGTTGTAATTGAGTCTGTTCAGACCGAGTATGCCAATGAAGATAATAGGAAATTGGAAGCAATAGTTGATGAATCAGGGTTAAGCTTGGTGTCCATGAAAACACCAAAAGGGGTGTCTGAAACTGATAAAAATTCATGTGTGATTGATATAAAGTGCAGCAGCCGCAAAGAGTTTTATGAGAGTTCTGAAGGTGAAAGGATTTGTAGGATTTGCCATCTGACTTCTGGGCAGTCATTGAATGCAACAACTGTTGGCACTGTTGAGAGTGCTACAAGCGAAGATTTGATTCAGCTTGGTTGTGCGTGTAAAGACGAGCTAGGCATTGCACACGGTCATTGTGCTGAGGCGTGGTTCAAGCTTAAGGGGAACAGGTTATGTGAAATATGTGGTGAGGCTGCAAAAAATGTCTCAGGTGTTACTAGTAATGCATTTATGGATGAGTGGAATGAAAGAAGGTTTGTTGACATCGATGGTAACTCGTCCCACAGGGTTGTGAGATGCTGGAGAGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTGGTAATAGCATTTGTTCTGCCGTGGTTTTTTCGTGTAAATATGTTCTAG 870 0.423 MDQHRSEVLDPVHDGNLSHSAEGVAIARDNISGEAGTSGEVGEDLGSDKEPKEEVKGQDKRDQENISDNLPGVDQGTSYNSRHLANQEVIETVVVIESVQTEYANEDNRKLEAIVDESGLSLVSMKTPKGVSETDKNSCVIDIKCSSRKEFYESSEGERICRICHLTSGQSLNATTVGTVESATSEDLIQLGCACKDELGIAHGHCAEAWFKLKGNRLCEICGEAAKNVSGVTSNAFMDEWNERRFVDIDGNSSHRVVRCWRGQPFCNFLMACLVIAFVLPWFFRVNMF* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0545 289 MobiDBLite consensus disorder prediction 43 67 - -
Gso4g0545 289 SUPERFAMILY RING/U-box 156 224 - -
Gso4g0545 289 Pfam RING-variant domain 161 222 IPR011016 GO:0008270
Gso4g0545 289 MobiDBLite consensus disorder prediction 1 79 - -
Gso4g0545 289 ProSiteProfiles Zinc finger RING-CH-type profile. 153 229 IPR011016 GO:0008270
Gso4g0545 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 234 IPR013083 -
Gso4g0545 289 PANTHER ZINC FINGER, RING-CH-TYPE 49 289 - -
Gso4g0545 289 SMART ringv_2 160 223 IPR011016 GO:0008270
Gso4g0545 289 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 49 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0545 Gso-Chr4 5256511 5260446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0545 141 288 C3H Transcription Factor Family AT5G05830 41.176 1.96e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0545 - - gmx:100776373 583.563