Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0540 ATGAAAATGAAGCTTCTCCTCATGCTTCTTCTTCTTGTTCTTCTTCTTCACCAACCCATTTGGGCTGCAGACCCTCCTGCTTCTTCTCCTGCTTTATCTCCAGGGGAGGAGCAGCATCACCGGAATAATAAAGTGGTAATAGCTATCGTCGTAGCCACCACTGCACTTGCTGCACTCATTTTCAGTTTCTTATGCTTCTGGGTTTATCATCATACCAAGTATCCAACAAAATCCAAATTCAAATCCAAAAATTTTCGAAGTCCAGAGAAGGGGATCACCTTAGCACCGTTTGTGAGTAAATTCAGTTCCATCAAGATTGTTGGCATGGACGGGTATGTTCCAATAATTGACTATAAGCAAATAGAAAAAACGACCAATAATTTTCAAGAAAGTAACATCTTGGGTGAGGGCGGTTTTGGACGTGTTTACAAGGCTTGTTTGGATCATAACTTGGATGTTGCAGTCAAAAAACTACATTGTGAGACTCAACATGCTGAGAGAGAATTTGAGAACGAGGTGAATATGTTAAGCAAAATTCAGCATCCGAATATAATATCTTTACTGGGTTGTAGCATGGATGGTTACACGAGGTTCGTTGTCTATGAGCTGATGCATAATGGATCATTGGAAGCTCAGTTACATGGACCTTCTCATGGCTCGGCATTGACTTGGCACATGAGGATGAAGATTGCTCTTGACACAGCAAGAGGATTAGAATATCTGCACGAGCACTGTCACCCTGCAGTGATCCATAGGGATATGAAATCTTCTAATATTCTCTTAGATGCAAACTTCAATGCCAAGCTGTCTGATTTTGGTCTTGCCTTAACTGATGGGTCCCAAAGCAAGAAGAACATTAAACTATCGGGTACCTTGGGATACGTAGCACCGGAGTATCTTCTAGATGGTAAATTAAGTGATAAAAGTGATGTCTATGCTTTTGGGGTTGTGCTATTGGAGCTCCTACTAGGAAGGAAGCCAGTAGAAAAACTGGTACCAGCTCAATGCCAATCTATTGTCACATGGGCCATGCCACAGCTCACGGACAGATCCAAGCTTCCAAGCATTGTGGATCCAGTGATTAAGAATACAATGGATCCCAAGCACTTGTACCAGGTTGCTGCTGTAGCTGTGCTGTGCGTGCAACCAGAACCTAGTTACCGTCCACTGATCATTGATGTTCTTCACTCACTCATCCCTCTTGTTCCCATTGAGCTTGGAGGAACACTAAGAGTTTCACAAGTAATTTGA 1251 0.4261 MKMKLLLMLLLLVLLLHQPIWAADPPASSPALSPGEEQHHRNNKVVIAIVVATTALAALIFSFLCFWVYHHTKYPTKSKFKSKNFRSPEKGITLAPFVSKFSSIKIVGMDGYVPIIDYKQIEKTTNNFQESNILGEGGFGRVYKACLDHNLDVAVKKLHCETQHAEREFENEVNMLSKIQHPNIISLLGCSMDGYTRFVVYELMHNGSLEAQLHGPSHGSALTWHMRMKIALDTARGLEYLHEHCHPAVIHRDMKSSNILLDANFNAKLSDFGLALTDGSQSKKNIKLSGTLGYVAPEYLLDGKLSDKSDVYAFGVVLLELLLGRKPVEKLVPAQCQSIVTWAMPQLTDRSKLPSIVDPVIKNTMDPKHLYQVAAVAVLCVQPEPSYRPLIIDVLHSLIPLVPIELGGTLRVSQVI* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0540 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Gso4g0540 416 Gene3D Phosphorylase Kinase; domain 1 94 203 - -
Gso4g0540 416 PANTHER BNAA04G14780D PROTEIN 30 414 - -
Gso4g0540 416 SMART serkin_6 128 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0540 416 Pfam Protein tyrosine and serine/threonine kinase 131 365 IPR001245 GO:0004672|GO:0006468
Gso4g0540 416 CDD STKc_IRAK 134 401 - -
Gso4g0540 416 Gene3D Transferase(Phosphotransferase) domain 1 204 403 - -
Gso4g0540 416 SUPERFAMILY Protein kinase-like (PK-like) 106 398 IPR011009 -
Gso4g0540 416 ProSiteProfiles Protein kinase domain profile. 128 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0540 416 ProSitePatterns Protein kinases ATP-binding region signature. 134 157 IPR017441 GO:0005524
Gso4g0540 416 PANTHER OS01G0750732 PROTEIN 30 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0540 Gso-Chr4 5212559 5216457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0540 36 402 Receptor kinase-like Gene Family AT3G58690 43.048 1.24e-97 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Gso4g0540 PK_Tyr_Ser-Thr 3.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0540 - - gmx:100775826 793.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0540 4 5212559 5216457 Gso6g0534 6 4941222 4956199 GST
Gso14g0970 14 13225491 13230359 Gso4g0540 4 5212559 5216457 PCT
Gso17g1826 17 36522343 36527620 Gso4g0540 4 5212559 5216457 PCT
Gso4g0540 4 5212559 5216457 Gso14g0970 14 13225491 13230359 PCT
Gso4g0540 4 5212559 5216457 Gso17g1826 17 36522343 36527620 PCT